BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG06FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig558 1027 0.0
>3x_Contig558
Length = 2126
Score = 1027 bits (518), Expect = 0.0
Identities = 534/538 (99%), Gaps = 1/538 (0%)
Strand = Plus / Minus
Query: 88 ttcagtttgctctcttagagcttctgtagcttctttggtcacttgttcaatctctgtacc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttcagtttgctctcttagagcttctgtagcttctttggtcacttgttcaatctctgtacc 491
Query: 148 ttctctaaattggacgttgtcgatagatgcgggctgtgaggcttgttctccttccttttc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttctctaaattggacgttgtcgatagatgcgggctgtgaggcttgttctccttccttttc 431
Query: 208 cgatgaagtttcttcctcattttcggtcgattcgggttccacgtcgaacttcttcaagta 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cgatgaagtttcttcctcattttcggtcgattcgggttccacgtcgaacttcttcaagta 371
Query: 268 atatgtttctatctcttcttgtccgttgttttcagcttcgtagatggcatcatggtcgaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atatgtttctatctcttcttgtccgttgttttcagcttcgtagatggcatcatggtcgaa 311
Query: 328 attattcctgatgaatggatcagcctcatactcttcacaaagaagctgtactatatccaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 attattcctgatgaatggatcagcctcatactcttcacaaagaagctgtactatatccaa 251
Query: 388 tttaccattcaacgaagcccagtgcaatgcagtgttacctgtttcgttttgcttgttgac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttaccattcaacgaagcccagtgcaatgcagtgttacctgtttcgttttgcttgttgac 191
Query: 448 ccattcctttagtttatcctttgggaaaatgcttagtagatattttaccacctcgaaatg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ccattcctttagtttatcctttgggaaaatgcttagtagatattttaccacctcgaaatg 131
Query: 508 accgttggcggctgccatatgcaaggcagatgacttagacaattcatctgtacattcaat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 accgttggcggctgccatatgcaaggcagatgacttagacaattcatctgtacattcaat 71
Query: 568 gagtgcacttggatctatcaaagtgggtaaaatatcctttagaagactccaaatctcc 625
|||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 70 gagtgcacttggatctatcaaagtggtaaaaatatccttaag-agactccaaatctcc 14
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9806
Number of Sequences: 1807
Number of extensions: 9806
Number of successful extensions: 128
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)