BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG06RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 1489 0.0
>3x_Contig1762
Length = 22098
Score = 1489 bits (751), Expect = 0.0
Identities = 827/841 (98%), Gaps = 9/841 (1%)
Strand = Plus / Minus
Query: 49 tttacaatttcaagctcataaatatttagttgaaactcttcccgcattaggtgtagacac 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8260 tttacaatttcaagctcataaatatttagttgaaactcttcccgcattaggtgtagacac 8201
Query: 109 atagtaactttggcaagccatgaaggatcttctttatacaagggatgagcgaatgtgtca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8200 atagtaactttggcaagccatgaaggatcttctttatacaagggatgagcgaatgtgtca 8141
Query: 169 ttacaattatcaaggtttagaaggatagtgttttgtaatgcaatgaaatcctgatcagag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8140 ttacaattatcaaggtttagaaggatagtgttttgtaatgcaatgaaatcctgatcagag 8081
Query: 229 tctgcaacatgtagcggagaggtgttagatttttccagctctgatctttgtgcttgccat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8080 tctgcaacatgtagcggagaggtgttagatttttccagctctgatctttgtgcttgccat 8021
Query: 289 atagctaaaaataaatgaaaagtttcgtgtagtacgtatttgataccaataaatattgat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8020 atagctaaaaataaatgaaaagtttcgtgtagtacgtatttgataccaataaatattgat 7961
Query: 349 ttcaaggcatttccagtcggatacgtatgaggagaaggaacaatttcccaagaattgctg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7960 ttcaaggcatttccagtcggatacgtatgaggagaaggaacaatttcccaagaattgctg 7901
Query: 409 ctgcttattatcatataagaatctgaaatatagtaacaatcatcaggactcgagacatgg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7900 ctgcttattatcatataagaatctgaaatatagtaacaatcatcaggactcgagacatgg 7841
Query: 469 agttggaactcgggggatgtaatctccagatatgggttgtacaatattagtgtatccttc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7840 agttggaactcgggggatgtaatctccagatatgggttgtacaatattagtgtatccttc 7781
Query: 529 tgcaaaaaggcgaagtaaccgatgagatcttccgaattatatacacaaacgtctcgcaca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7780 tgcaaaaaggcgaagtaaccgatgagatcttccgaattatatacacaaacgtctcgcaca 7721
Query: 589 atcccaggttttatatccatggttttcgtcattgaaattggagagtatccaaatgctttg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7720 atcccaggttttatatccatggttttcgtcattgaaattggagagtatccaaatgctttg 7661
Query: 649 aacctgacattcgtcatgacagaattgttcaagttgaagatccatatcttgccccaacca 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7660 aacctgacattcgtcatgacagaattgttcaagttgaagatccatatcttgccccaacca 7601
Query: 709 ttcacgttatctaatattccaatagcttgcttatcacccatcttggttgatactactttt 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7600 ttcacgttatctaatattccaatagcttgcttatcacccatcttggttgatactac-ttt 7542
Query: 769 tcccttggacganntatgtaagtacttttcactgcagtaatttttgnttaggtaaaccat 828
|||||||||||| ||| | |||| |||||||||||||||||||| ||||||||| |||
Sbjct: 7541 tcccttggacgata-atgaaggtac-tttcactgcagtaatttttg-ttaggtaaa-cat 7486
Query: 829 ctttggaaatgtcactttgatatttgactgatcaggtggcattcattcgtaggcgttatt 888
||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||| |||
Sbjct: 7485 ctttggaaatgtcac-ttgata-ttgactgatcaggt-gcattca-tcgtaggcgtcatt 7430
Query: 889 t 889
|
Sbjct: 7429 t 7429
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7286
Number of Sequences: 1807
Number of extensions: 7286
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)