BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG07FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1427 1211 0.0
>3x_Contig1427
Length = 10253
Score = 1211 bits (611), Expect = 0.0
Identities = 705/729 (96%), Gaps = 6/729 (0%)
Strand = Plus / Minus
Query: 86 tttctttgttaaaaagggaagacattcgtttcttagcttcatcaaagtgtttcaccaacc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5336 tttctttgttaaaaagggaagacattcgtttcttagcttcatcaaagtgtttcaccaacc 5277
Query: 146 tttcatcttctttccaattatattgtaattgagattctcgaaatatttcttttaatcctt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5276 tttcatcttctttccaattatattgtaattgagattctcgaaatatttcttttaatcctt 5217
Query: 206 catattcagcaagccctttccttttcctaagcagttgtatctctttccatatatcttttg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5216 catattcagcaagccctttccttttcctaagcagttgtatctctttccatatatcttttg 5157
Query: 266 tagaattaacatatccttgatctgatgtttgaaggtctttcttaagctcaacaaaatcat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5156 tagaattaacatatccttgatctgatgtttgaaggtctttcttaagctcaacaaaatcat 5097
Query: 326 ggtgtaaatccctgaattgaatttcttctctgtttaaaatgaactgtggaataatatcca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5096 ggtgtaaatccctgaattgaatttcttctctgtttaaaatgaactgtggaataatatcca 5037
Query: 386 tttcaagaaaggtctttccaattcgatgaaatggatctatgtctaaaacattttgattcg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5036 tttcaagaaaggtctttccaattcgatgaaatggatctatgtctaaaacattttgattcg 4977
Query: 446 gatgcaagtgttttttcaaaaaacgttccaaagagtccgtgtgcaatatttcattcatat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4976 gatgcaagtgttttttcaaaaaacgttccaaagagtccgtgtgcaatatttcattcatat 4917
Query: 506 ctagatcagttaacagaacaggttgccgaaaatagcatttggatagttntaaccatcccg 565
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4916 ctagatcagttaacagaacaggttgccgaaaatagcatttggatagttttaaccatccgc 4857
Query: 566 caccaaataagttatagtcagccatcatttgcaataaataaggtatatgagcctcanaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4856 aaccaaataagttatagtcagccatcatttgcaataaataaggtatatgagcctcaaaga 4797
Query: 626 catccacttttgaggtgattatttctgccatctcttaagt-attcagagagtttattact 684
|||||||||||||||||| || |||||||||||| ||||| |||||||||||||||||||
Sbjct: 4796 catccacttttgaggtgaata-ttctgccatctc-taagtaattcagagagtttattact 4739
Query: 685 atttgaaccattcaaaagagtatttttatagttagggtcatatcctacgtggtattcgta 744
|| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||| |||
Sbjct: 4738 atatgaaccattcaaaagagtaattttatagtaaggttcatatcctacgtggtatccgt- 4680
Query: 745 aaaatgaaacgcttttg-ccacggacccatttgccatgtatttcaggggaagttagcttc 803
|||||| ||||| |||| | |||||| |||| || |||||||||| ||||||||||||||
Sbjct: 4679 aaaatggaacgcctttgacaacggacacattagcaatgtatttca-gggaagttagcttc 4621
Query: 804 tttttaaaa 812
| |||||||
Sbjct: 4620 tctttaaaa 4612
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7913
Number of Sequences: 1807
Number of extensions: 7913
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)