BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG08FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig993 587 e-167
>3x_Contig993
Length = 4399
Score = 587 bits (296), Expect = e-167
Identities = 380/400 (95%), Gaps = 6/400 (1%)
Strand = Plus / Plus
Query: 271 ttgtttcaaagacattagatcatttcgtaaagtgcttgtttcgttcgtgaaaaactgttt 330
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 31 ttgtttcaaagacattttatcatttcttaaagtgcttgtttcgttcgtgaaaaactgttt 90
Query: 331 ataagattggtgtgcatcgacgatagcttcatattgaattttatacagagtcgattgttc 390
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 aaaagattggtgtgcatcgacgatagcttcatattgaattttatacagagtcgattgttc 150
Query: 391 cgtaag-cttttcgttttcgagtgatagttt-ctt-aacggttt-cttctaactcaagat 446
|||||| |||| ||||||||||||||||||| ||| |||||||| || ||||||||||||
Sbjct: 151 cgtaagactttacgttttcgagtgatagtttacttaaacggtttactactaactcaagat 210
Query: 447 tttttttggctgcatcttcattgaacacagtttgtttcttcaaagaactctccaattcat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tttttttggctgcatcttcattgaacacagtttgtttcttcaaagaactctccaattcat 270
Query: 507 tcattctattagttttcctatctagtattgcatttagggttcatattttttgtctgcagt 566
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 271 tcattctattagttttcctatctagtattgcattta-ggttcatattttctgtctgcagt 329
Query: 567 ctcgagatggtcttcaattgtttattctggttctttccagaagattcccattcattcact 626
||||||||||||| ||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct: 330 ctcgagatggtctccaattgtttattctgtttcttcccagaagattccaattcattcact 389
Query: 627 aattgatggcatttagacgccatttt-agattcctactcg 665
||||||||||||| ||||| |||||| |||||| ||||||
Sbjct: 390 aattgatggcattgagacgtcattttaagattcgtactcg 429
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8370
Number of Sequences: 1807
Number of extensions: 8370
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)