BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG08RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1471 1298 0.0
>3x_Contig1471
Length = 8032
Score = 1298 bits (655), Expect = 0.0
Identities = 711/726 (97%), Gaps = 3/726 (0%)
Strand = Plus / Plus
Query: 140 tatctaataagttgactactgctaccgaactgtcagatgatttggatgctgctacccagc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatctaataagttgactactgctaccgaactgtcagatgatttggatgctgctacccagc 60
Query: 200 tggcagaggctaaaaagaaagttacagcagccaatgatacacaattacagaaatatatcg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggcagaggctaaaaagaaagttacagcagccaatgatacacaattacagaaatatatcg 120
Query: 260 aagaacaagaccccatgatcaaaagtttaccagaatttttgttaccaagagttaagaagg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagaacaagaccccatgatcaaaagtttaccagaatttttgttaccaagagttaagaagg 180
Query: 320 aattctatgaacaacaggttaggttgaacggtgggttttacgacaaaagcgtgcgcccta 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattctatgaacaacaggttaggttgaacggtgggttttacgacaaaagcgtgcgcccta 240
Query: 380 aagatcgttctttgagattaacgaatgaagaattagaagtgcttgaacctagtgtctatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagatcgttctttgagattaacgaatgaagaattagaagtgcttgaacctagtgtctatg 300
Query: 440 ttaaatcttacagagtaaaatcatctatgaagaaggccacacagctgcttagacttttga 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttaaatcttacagagtaaaatcatctatgaagaaggccacacagctgcttagacttttga 360
Query: 500 acggattggacgctaagaaagctttgactcaatgtcatttctccgataaaaaggttgccc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acggattggacgctaagaaagctttgactcaatgtcatttctccgataaaaaggttgccc 420
Query: 560 gtgatgttgccgaattattggagcgcggtattaatgatggtgtgaagcttggcttggatg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtgatgttgccgaattattggagcgcggtattaatgatggtgtgaagcttggcttggatg 480
Query: 620 ccaatgacctatacatctnccagatatggaccggcagtgatggaatttggcaaaaacgtg 679
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 481 ccaatgacctatacatctcccagatatggaccggcagtgatggattttggcaaaaacgtg 540
Query: 680 tcgaatggaagggtagaggtagacgtggtctcattgaacacccatatgtgcatatcaaat 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcgaatggaagggtagaggtagacgtggtctcattgaacacccatatgtgcatatcaaat 600
Query: 740 gcatatttgagaccaagagtgtaacgaagagaagactagagcacgaagcccaactaaaag 799
||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 601 gcatattgaagaccaagagtgtaaagaagagaagactagagcacgaagccaaactaaaag 660
Query: 800 aacaaggaaagaacccgtggg-tcaattaccagataaa-ccatctga-attctatgggtg 856
||||| | ||||| ||||||| ||||||| |||||||| ||||| || |||||||||||
Sbjct: 661 aacaaaggaagaaaccgtgggttcaattagcagataaacccatcagaggttctatgggtg 720
Query: 857 gtgttt 862
||||||
Sbjct: 721 gtgttt 726
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5981
Number of Sequences: 1807
Number of extensions: 5981
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)