BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG09FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1425 1245 0.0
>3x_Contig1425
Length = 7919
Score = 1245 bits (628), Expect = 0.0
Identities = 708/723 (97%), Gaps = 9/723 (1%)
Strand = Plus / Plus
Query: 177 tgtatcaactctgtcacttcaattatagactgcatgaatggagaattagccaattgttca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtatcaactctgtcacttcaattatagactgcatgaatggagaattagccaattgttca 60
Query: 237 gaaccaatcttcacttcgatcatcgaagaggctcttcatgtattccaaatcgcatataaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaaccaatcttcacttcgatcatcgaagaggctcttcatgtattccaaatcgcatataaa 120
Query: 297 ccgttattcgattatccagagaccttcagaaatactgaaagtgggaatctaccagaacta 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccgttattcgattatccagagaccttcagaaatactgaaagtgggaatctaccagaacta 180
Query: 357 gacgtcactggcagattgaatttagaaagaacactgaaaaataccatttatatgggatgt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gacgtcactggcagattgaatttagaaagaacactgaaaaataccatttatatgggatgt 240
Query: 417 atagtgaatggaagtaactcatcttcaatgagacaggacgtcctacatttaagagaaaca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atagtgaatggaagtaactcatcttcaatgagacaggacgtcctacatttaagagaaaca 300
Query: 477 gaaattgattttattaacggctacatcgtgacgttgtgcaaaaaattctcactaccagaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaattgattttattaacggctacatcgtgacgttgtgcaaaaaattctcactaccagaa 360
Query: 537 tctgacgctaaagtcaacaaaaccatacagcaacttgtgaaattgagattgaaattgaac 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tctgacgctaaagtcaacaaaaccatacagcaacttgtgaaattgagattgaaattgaac 420
Query: 597 acgtcgagaaatatatagacattaagaaaatgtgtatcatatatatcatatagtgtaaaa 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acgtcgagaaatatatagacattaagaaaatgtgtatcatatatatcatatagtgtaaaa 480
Query: 657 ataaaccttcatgagctgatcactttccctttcttgcgctctcagtatnttgacatcttt 716
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 481 ataaaccttcatgagctgatcactttccctttcttgcgctctcagtattttgacatcttt 540
Query: 717 attttgacaat-aattctttttcttttttacatttattaccccggacagttaccatttgg 775
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 a-tttgacaataaattctttttcttttttacatttattaccccggacagttaccatttgg 599
Query: 776 agtgttaaatttc-attgaaaaacccac-ttaacagcagcaaaataa-gtacgacattat 832
|||| |||||||| |||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 600 agtg-taaatttcaattgaaaaacccactttaacagcagcaaaataaggtacgacattat 658
Query: 833 tttgcgacttt-acttgc-atattataggtttattta-ctgaacatgtttgtttatttat 889
||||||||||| |||||| |||| ||||||||| || |||||||||| ||||||| |||
Sbjct: 659 tttgcgactttcacttgcaatatattaggtttatatacctgaacatgtatgtttatatat 718
Query: 890 tta 892
|||
Sbjct: 719 tta 721
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8251
Number of Sequences: 1807
Number of extensions: 8251
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)