BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG10FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1241 1237 0.0
>3x_Contig1241
Length = 5349
Score = 1237 bits (624), Expect = 0.0
Identities = 654/660 (99%), Gaps = 3/660 (0%)
Strand = Plus / Plus
Query: 87 actgccaaaacgattccccagttatgctgctccgactcaatcgtcccatttacctagatc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2412 actgccaaaacgattccccagttatgctgctccgactcaatcgtcccatttacctagatc 2471
Query: 147 gtcaataaaaagatcattaacggatttagctcaagggacgcaatcgtttagcaaaagatc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2472 gtcaataaaaagatcattaacggatttagctcaagggacgcaatcgtttagcaaaagatc 2531
Query: 207 gttacgtacacctccggatcatgatatgaatattgatttaacaagtgagttgacaaattc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2532 gttacgtacacctccggatcatgatatgaatattgatttaacaagtgagttgacaaattc 2591
Query: 267 acaaacaaatccgttgttgaatcgctacatgaagagagaagaggttgaaccagaacctct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2592 acaaacaaatccgttgttgaatcgctacatgaagagagaagaggttgaaccagaacctct 2651
Query: 327 tcatgtcattttatccaaggaccctaaactgggattggatttactacaaaagtatttatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2652 tcatgtcattttatccaaggaccctaaactgggattggatttactacaaaagtatttatt 2711
Query: 387 atcggataccaaaatcggcgatgaagagaaggtccaatctgcaatagtgtcgttgataag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2712 atcggataccaaaatcggcgatgaagagaaggtccaatctgcaatagtgtcgttgataag 2771
Query: 447 aactaaccccaaagccttcaaaccccttttgcatttaccaaaattctaccaactgattcc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2772 aactaaccccaaagccttcaaaccccttttgcatttaccaaaattctaccaactgattcc 2831
Query: 507 tttaaatttttctatggttttattgccattaaatgacctcgatatctcgatgattgaaac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2832 tttaaatttttctatggttttattgccattaaatgacctcgatatctcgatgattgaaac 2891
Query: 567 tcaattcaaaacatatgatattataaacaatgttatttcaatattacaatcattggagga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2892 tcaattcaaaacatatgatattataaacaatgttatttcaatattacaatcattggagga 2951
Query: 627 ttaaaactctgaatggtctatattttatgtgcgattcaaatatcagatatacaattttct 686
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2952 taaaaactctgaatggtctatattttatgtgcgattcaaatatcagatatacaa-tttct 3010
Query: 687 gtttcaatactatagncaaaaatgctcaatacgggttaccttttcagatcaactggtaaa 746
||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct: 3011 gtttcaatactatag-caaaaatgctcaatac-ggttaccctttcagatcaactgataaa 3068
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7751
Number of Sequences: 1807
Number of extensions: 7751
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)