BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZG10RM1.SCF screened BAC_end
         (930 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1761                                                        1253   0.0  

>3x_Contig1761 
          Length = 23186

 Score = 1253 bits (632), Expect = 0.0
 Identities = 662/668 (99%), Gaps = 3/668 (0%)
 Strand = Plus / Minus

                                                                        
Query: 47   ttctaatcatgtttatacgcgattagatatactactcatctgctttcatcatcttcattt 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6167 ttctaatcatgtttatacgcgattagatatactactcatctgctttcatcatcttcattt 6108

                                                                        
Query: 107  tccaatcttttaaagatcagaaaagtgtgaaatattctaaaagtcacgtgaagaagaatt 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6107 tccaatcttttaaagatcagaaaagtgtgaaatattctaaaagtcacgtgaagaagaatt 6048

                                                                        
Query: 167  tggaactccgacgttgtggggatattaatatgtacaaggttacgtagatctgagtattga 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6047 tggaactccgacgttgtggggatattaatatgtacaaggttacgtagatctgagtattga 5988

                                                                        
Query: 227  ttgttttatgagaatgatcatctaggtcgtaattgaatcatgtgaaggttgttcagatag 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5987 ttgttttatgagaatgatcatctaggtcgtaattgaatcatgtgaaggttgttcagatag 5928

                                                                        
Query: 287  tttcttcataggagaaaaagtgaaagtaatttaaatatggagttggttgaaatcaagcag 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5927 tttcttcataggagaaaaagtgaaagtaatttaaatatggagttggttgaaatcaagcag 5868

                                                                        
Query: 347  agtaatataccttcttgacatccacaattttcttacctctacctagagcaatttcatcta 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5867 agtaatataccttcttgacatccacaattttcttacctctacctagagcaatttcatcta 5808

                                                                        
Query: 407  tagatttttgagacttggtgatagcgtctatagtacccttggctatgttcatgatatttc 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5807 tagatttttgagacttggtgatagcgtctatagtacccttggctatgttcatgatatttc 5748

                                                                        
Query: 467  tactcttgtaaacttttgcacttaaatctttgataccagcacattcacaaatttcataaa 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5747 tactcttgtaaacttttgcacttaaatctttgataccagcacattcacaaatttcataaa 5688

                                                                        
Query: 527  ttacgtgattgactcttagaccgaaacctggcttagcagctctcaagaatagtttcacac 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5687 ttacgtgattgactcttagaccgaaacctggcttagcagctctcaagaatagtttcacac 5628

                                                                        
Query: 587  cgtggtatctatagtctatgtctt-aaaaatagttcttttttc-aatctaggcacttctt 644
            |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 5627 cgtggtatctatagtctatgtcttcaaaaatagttcttttttcaaatctaggcacttctt 5568

                                                                        
Query: 645  tttagttcctcactgcatccc-atgagctttcttgatggaatctgccatattttcacggg 703
            || |||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||
Sbjct: 5567 ttaagttcctcactgcatcccaatgagctttcttgatggattctgccatatcttcacggg 5508

                    
Query: 704  atttaccc 711
            ||||||||
Sbjct: 5507 atttaccc 5500


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7915
Number of Sequences: 1807
Number of extensions: 7915
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)