BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG11FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 1483 0.0
>3x_Contig1759
Length = 25622
Score = 1483 bits (748), Expect = 0.0
Identities = 821/836 (98%), Gaps = 7/836 (0%)
Strand = Plus / Plus
Query: 87 tatttcgagccgggtatctcatgagagacaatagtatatccattcactgaaactaccaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10032 tatttcgagccgggtatctcatgagagacaatagtatatccattcactgaaactaccaaa 10091
Query: 147 tcagctctttcatctaacatcaaggggcatcggaatttgattctcttgatttcctttgtt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10092 tcagctctttcatctaacatcaaggggcatcggaatttgattctcttgatttcctttgtt 10151
Query: 207 cttttcactttcgattttatgtacgatgcattaatgggattagtactagggccgtgtgag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10152 cttttcactttcgattttatgtacgatgcattaatgggattagtactagggccgtgtgag 10211
Query: 267 gatagccatgattgtgcttcgttgatctttgaaccccatttcaagatatctgcatacata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10212 gatagccatgattgtgcttcgttgatctttgaaccccatttcaagatatctgcatacata 10271
Query: 327 gaatcgtcaaatggtttatcttcagaaccaatgaaaaatgtgacaaaattgatataatag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10272 gaatcgtcaaatggtttatcttcagaaccaatgaaaaatgtgacaaaattgatataatag 10331
Query: 387 tcatataaatcgtcgacaacttttctaagacgagatctgctgtcaacgttcaagaactca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10332 tcatataaatcgtcgacaacttttctaagacgagatctgctgtcaacgttcaagaactca 10391
Query: 447 gccggtttgtcgtcatcagtaaaaaaaaatattttcttgttagtcagttgcttctgtcct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10392 gccggtttgtcgtcatcagtaaaaaaaaatattttcttgttagtcagttgcttctgtcct 10451
Query: 507 tctatcggttgtaaaaatgtttctctaactttgatcaatactggagaaagttcaattggg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10452 tctatcggttgtaaaaatgtttctctaactttgatcaatactggagaaagttcaattggg 10511
Query: 567 ttgtttgggtctgcgataggaatctcatctttgagaagtattctatcctgttctatatct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10512 ttgtttgggtctgcgataggaatctcatctttgagaagtattctatcctgttctatatct 10571
Query: 627 tccaacagatcagatacacgtttcatattcttatagttcacatcacgtaacggtattagt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10572 tccaacagatcagatacacgtttcatattcttatagttcacatcacgtaacggtattagt 10631
Query: 687 tcatacacattatcttcagcgttaggatgagaacagttgtaaatataacagccaactgca 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10632 tcatacacattatcttcagcgttaggatgagaacagttgtaaatataacagccaactgca 10691
Query: 747 gtacttggcataacaactacccaattgtgacattaaatcattttagtgaaatctaaaatc 806
||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct: 10692 gtacttggcataacaacta-ccaattgtgacattaaatca-tttagtg-aatctaaaatc 10748
Query: 807 tctaagagatggaattttggcttcaagaacagggntttgaaagaaacatcgtgggtggtt 866
|||||||| | |||||||| || ||||| ||||| ||||||||| ||||||||||| |||
Sbjct: 10749 tctaagag-ttgaattttgcctccaagatcaggg-tttgaaagatacatcgtgggt-gtt 10805
Query: 867 agctgaatacaaaacacgataccatcatgggccttcgtaacgtctccattttttgt 922
||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||
Sbjct: 10806 agctgaatacaaaacacgataccatcatgtg-cttcgtagcgtctccatttcttgt 10860
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7711
Number of Sequences: 1807
Number of extensions: 7711
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)