BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG11RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1428 1645 0.0
>3x_Contig1428
Length = 9146
Score = 1645 bits (830), Expect = 0.0
Identities = 860/866 (99%), Gaps = 3/866 (0%)
Strand = Plus / Minus
Query: 54 ccaagtggatcagttagttaag-tcccaatcatctatcaagctagtggctagcgctctta 112
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7714 ccaagtggatcagttagttaagctcccaatcatctatcaagctagtggctagcgctctta 7655
Query: 113 ttcaaccagaaggtactcgctggactgtctcatttcccgaacagcggaatattaccgaac 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7654 ttcaaccagaaggtactcgctggactgtctcatttcccgaacagcggaatattaccgaac 7595
Query: 173 gataaacctatcgaacgatacggcggaaaacttttcaataactatggaacctgtattctc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7594 gataaacctatcgaacgatacggcggaaaacttttcaataactatggaacctgtattctc 7535
Query: 233 gagtagaatctcaattaaatggggtgaacaagagccccacgaggataccaatacatgggt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7534 gagtagaatctcaattaaatggggtgaacaagagccccacgaggataccaatacatgggt 7475
Query: 293 ccttactgctggtaatgggaagttcgtagatgcaagaattgacttaaaaaccaatatacc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7474 ccttactgctggtaatgggaagttcgtagatgcaagaattgacttaaaaaccaatatacc 7415
Query: 353 acagtggttaataactggagaagaacaagaaattcctacaaaagacggctacgagttttc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7414 acagtggttaataactggagaagaacaagaaattcctacaaaagacggctacgagttttc 7355
Query: 413 tttgaaatttgttcatgaactggattctgtacatggaaatgatcccgagcgtagtgctga 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7354 tttgaaatttgttcatgaactggattctgtacatggaaatgatcccgagcgtagtgctga 7295
Query: 473 ttttggtcatttcaaatccctgacatatagtagtagactcgaggaaggggagatgtataa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7294 ttttggtcatttcaaatccctgacatatagtagtagactcgaggaaggggagatgtataa 7235
Query: 533 tgtttctgaggagagagtcatgacgtataaagaaatttggcaaaccattgacccaataag 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7234 tgtttctgaggagagagtcatgacgtataaagaaatttggcaaaccattgacccaataag 7175
Query: 593 atcttcaacagatcatctagtacccgtagagtctgatatatatgatggatctagtgtcac 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7174 atcttcaacagatcatctagtacccgtagagtctgatatatatgatggatctagtgtcac 7115
Query: 653 gtctattgtctgggagctgtcggacgacgccaagaataatgcacgcgggagattgatcag 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7114 gtctattgtctgggagctgtcggacgacgccaagaataatgcacgcgggagattgatcag 7055
Query: 713 tataggaaaagttagtcaaggaattgtggaatataacggattgtttcagtgcattagaac 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7054 tataggaaaagttagtcaaggaattgtggaatataacggattgtttcagtgcattagaac 6995
Query: 773 gtggaataactcagtggtataccaatacggttctcatgtggaagaaatttttgggcagtt 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6994 gtggaataactcagtggtataccaatacggttctcatgtggaagaaatttttgggcagtt 6935
Query: 833 tatgaagggattgagcactcacaatttcccaatttccatggcaaagaacataatcctaga 892
|||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||
Sbjct: 6934 tatgaagggattgagcactcacaa-ttcccaatttccatggcaaagaacatatccttaga 6876
Query: 893 ctacctgcttttgacaacttcgcaag 918
|||||||| |||||||||||||||||
Sbjct: 6875 ctacctgc-tttgacaacttcgcaag 6851
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5913
Number of Sequences: 1807
Number of extensions: 5913
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)