BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG12FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1734 1485 0.0
>3x_Contig1734
Length = 17938
Score = 1485 bits (749), Expect = 0.0
Identities = 830/853 (97%), Gaps = 4/853 (0%)
Strand = Plus / Minus
Query: 88 tctccccaccttagaaaaaaagaaaactgatagtgcccaaacttttaacatttgtaacgt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9319 tctccccaccttagaaaaaaagaaaactgatagtgcccaaacttttaacatttgtaacgt 9260
Query: 148 ataattgtaatacttaatatcaatcaatatctatttaacaccctatatgactatctgacc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9259 ataattgtaatacttaatatcaatcaatatctatttaacaccctatatgactatctgacc 9200
Query: 208 tgacagattggaaagatctgacagacacttccctccggattaatttctcttctttttgac 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9199 tgacagattggaaagatctgacagacacttccctccggattaatttctcttctttttgac 9140
Query: 268 agcgtattatcggaaaaactcctcaattcaacttcgtctccacaattgaaaaaccgggac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9139 agcgtattatcggaaaaactcctcaattcaacttcgtctccacaattgaaaaaccgggac 9080
Query: 328 agaaatacccgtacaacggttctcaaaaaggtaaataaaaggaaaaatagagagaaaaag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9079 agaaatacccgtacaacggttctcaaaaaggtaaataaaaggaaaaatagagagaaaaag 9020
Query: 388 aaagaaaatctaatagtggaacctgcagaacaacctgattcactttttttcgtttttttc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9019 aaagaaaatctaatagtggaacctgcagaacaacctgattcactttttttcgtttttttc 8960
Query: 448 cggaacaatgtggtgcgtttccttaagctaaagaaatgtcaacttatatatatataaaga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8959 cggaacaatgtggtgcgtttccttaagctaaagaaatgtcaacttatatatatataaaga 8900
Query: 508 aatgctgcttcggtgaatatttattgctaaagaactgttcctggggtttatctcttgtct 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8899 aatgctgcttcggtgaatatttattgctaaagaactgttcctggggtttatctcttgtct 8840
Query: 568 ggaaagttgtccagtctccatacgtaggagttatcatcaacatactatagcttcaacaga 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8839 ggaaagttgtccagtctccatacgtaggagttatcatcaacatactatagcttcaacaga 8780
Query: 628 taggagatactgagaaagagtaggatagtaagatagaaagtttaaacgataaaaagagac 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8779 taggagatactgagaaagagtaggatagtaagatagaaagtttaaacgataaaaagagac 8720
Query: 688 tggttctttctttgcataaaaaaatccgnagaaatatgtctatagncacttctgattatt 747
|||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 8719 tggttcttcctttgcataaaaaaatccggagaaatatgtctatagcaacttctgattatt 8660
Query: 748 cacgaattgatgattaagtttggccaactgccaaccgcactggtcccaaggaggatccgt 807
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8659 cacgaattgatgataaggtttggccaactgccaaccgcactggtcccaaggaggatccgt 8600
Query: 808 ncaaatacctttgtacgtttgtgacgaaaaaagtggctcttggtgatggccatttcaacc 867
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 8599 ccaaataccattgtacgtatgtgacgaaaaaagtggctcttggtgatggccatttcagcg 8540
Query: 868 tggttgaaggaattgtttg-attcaatgactggagatagaaatg-ttttaaacttgttta 925
||| |||||||| ||| || || ||||||||||||||||| ||| | | ||||| ||| |
Sbjct: 8539 tgg-tgaaggaa-tgtatgaatacaatgactggagatagatatgctatgaaactggttca 8482
Query: 926 caagtcgntggtt 938
||||||| |||||
Sbjct: 8481 caagtcgttggtt 8469
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,935
Number of Sequences: 1807
Number of extensions: 10935
Number of successful extensions: 106
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)