BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG12RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1737 797 0.0
3x_Contig768 218 2e-56
>3x_Contig1737
Length = 17214
Score = 797 bits (402), Expect = 0.0
Identities = 402/402 (100%)
Strand = Plus / Plus
Query: 50 gaagtgaaatagaaggcataaagaattcaagatctaggctttgcacaagatcgtcatcat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16811 gaagtgaaatagaaggcataaagaattcaagatctaggctttgcacaagatcgtcatcat 16870
Query: 110 cgttgtgaaaaccaccgatccgctggctgccggcgatactatcgtccaattcatccttgg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16871 cgttgtgaaaaccaccgatccgctggctgccggcgatactatcgtccaattcatccttgg 16930
Query: 170 acccatcgaacagagacagagaaagaggagacagtggtgtggacgaaacaagagccatat 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16931 acccatcgaacagagacagagaaagaggagacagtggtgtggacgaaacaagagccatat 16990
Query: 230 tgacccgctgtggagaattaccctcttcctccactctctctatctcaatcacaggctccg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16991 tgacccgctgtggagaattaccctcttcctccactctctctatctcaatcacaggctccg 17050
Query: 290 ataaaggcggtttctccagctcctgcaccagctcttgtagctgcttctcctgaactggtt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17051 ataaaggcggtttctccagctcctgcaccagctcttgtagctgcttctcctgaactggtt 17110
Query: 350 cctcctcctttaccaccacagttttcttggttatcatcttcttgttcttcttgactttgg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17111 cctcctcctttaccaccacagttttcttggttatcatcttcttgttcttcttgactttgg 17170
Query: 410 tggcctgtttcccagtggcagcgttcaaatccaccgcacata 451
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17171 tggcctgtttcccagtggcagcgttcaaatccaccgcacata 17212
>3x_Contig768
Length = 2062
Score = 218 bits (110), Expect = 2e-56
Identities = 194/214 (90%), Gaps = 6/214 (2%)
Strand = Plus / Plus
Query: 711 ataatcaatggctgaatacaggacacggtctttaccanctttaccctttgtcttattggt 770
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5 ataatcaatggctgaatacaggacacggtctttacca-ctttaccctttgtcttattggt 63
Query: 771 attgtagaagaaatgatgattcatttc-aagcttttccttttaaataatgacttttgata 829
||||||||||||||||||||||||||| ||||||||||||| ||||||||||| | ||||
Sbjct: 64 attgtagaagaaatgatgattcatttcaaagcttttcctttaaaataatgactatagata 123
Query: 830 aggaaatatgtgagcttttaagaggagaacag-ttataagaggggatagaggaacttttt 888
|||||||| |||||| |||| |||||||| ||||||||||| |||||| ||| | ||
Sbjct: 124 aggaaataatgaagctttaaaga-gagaacagtttataagagggaatagagaaac-tatt 181
Query: 889 tgagcctacctaatccgggctacatagtggctag 922
|||| |||||| ||||| |||||||||| |||||
Sbjct: 182 tgag-ctacctgatccgtgctacatagttgctag 214
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6856
Number of Sequences: 1807
Number of extensions: 6856
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 2
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)