BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH01FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1554 1072 0.0
>3x_Contig1554
Length = 8957
Score = 1072 bits (541), Expect = 0.0
Identities = 632/653 (96%), Gaps = 7/653 (1%)
Strand = Plus / Plus
Query: 87 tatgtaaagttggttgacggttcataataacaacatctctgtttttgatatgacggtaca 146
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 2158 tatgtaaagttggttgacggttcataataacaacatctctgtttttgatatgtcgttaca 2217
Query: 147 ctttcttattaatggaatgtgcaacatcatgggtagaaggagtcaataattgattggcta 206
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2218 ctttcttattaatggaatgtgca-catcatgggtagaaggagtcaataattgattggcta 2276
Query: 207 aagccttccgttgttcaagagtcattccaaccaaagaaacgaaggatccatcttcgtttt 266
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2277 aagccttccgttgttcaagagtcattcaaaccaaagaaacgaaggatccatcttcgtttt 2336
Query: 267 gaatttgtgttgcacctggccatttatctggaccattgataacagcttggcgtaattctg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2337 gaatttgtgttgcacctggccatttatctggaccattgataacagcttggcgtaattgtg 2396
Query: 327 ccacattgtatgcagtaacaggctctgggtatgttaacttcgttgcaaacactggtggca 386
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2397 ccacattgtatgcagtaacaggctctgggtatgtgaacttcgttgcaaacactggtggca 2456
Query: 387 caccaatttcatttgtttcaatatttggatctggagaaatgactgaacgagcagcgtagt 446
|| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 2457 ca-caatttcatttgtttcaatatttgggtctggagagatgactgaacgagcagcgtagt 2515
Query: 447 tcacacgtttacccatcatatgttttctgaacaaaccttctttcttttccaatgcttgct 506
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2516 tcacacgtttacccatcatatgtgttctgaacaaaccttctttcttttccaatgcttgct 2575
Query: 507 tgagaccagggattggtaccttgttgcctgaactgctttgcgcctttgttgaatcaatga 566
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2576 tgagaccagggattggtaccttgttgcctgagctgctttgcgcctttgttgaatcaatga 2635
Query: 567 aggcatttacatcgttctgaat-gtaacaaaagcattcatcaatctggtaaagattacct 625
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 2636 aggcatttacatcgttctgaatggtaacaaaagcattcatcaatctgttaaagattacct 2695
Query: 626 ttctatcatcagcagatactttattcttttgttagcgcgacattttcatcggttaagatc 685
|||||||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||
Sbjct: 2696 ttctatcatcagcagatactttatccttttgtaagcgcgaca-tttcatc-gttaagatc 2753
Query: 686 cctgattagcagggatgttgttaagatcttttgac-acaacttgttttgggtg 737
|||||||||||| ||||||||||||||| |||||| |||||| ||||||||||
Sbjct: 2754 cctgattagcagtgatgttgttaagatc-tttgacaacaactggttttgggtg 2805
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7634
Number of Sequences: 1807
Number of extensions: 7634
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)