BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH01RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1588 0.0
>3x_Contig1772
Length = 25851
Score = 1588 bits (801), Expect = 0.0
Identities = 839/849 (98%), Gaps = 2/849 (0%)
Strand = Plus / Plus
Query: 56 acgtgcactatcagatgctttagaaatcattcagcaagttagcaagccagtcgatgttga 115
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1406 acgtgcactatcagatgctttagatatcattcagcaagttagcaagccagtcgatgttga 1465
Query: 116 gaacgatgttgccatgaagaaattgatccaagctgccattggaaccaaatatgttaacca 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 gaacgatgttgccatgaagaaattgatccaagctgccattggaaccaaatatgttaacca 1525
Query: 176 ctggtctgaaaagatgtgtgaattggcattgaatgcggtcaagaccgtgagaatcgattt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1526 ctggtctgaaaagatgtgtgaattggcattgaatgcggtcaagaccgtgagaatcgattt 1585
Query: 236 gggtactacttcagcaggcgaaactaattatgagattgatatcaagagatacgttcgtat 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1586 gggtactacttcagcaggcgaaactaattatgagattgatatcaagagatacgttcgtat 1645
Query: 296 tgaaaaaattccaggtggtgatgtactagattcgaaggttttgaaaggtgtgatgctaaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1646 tgaaaaaattccaggtggtgatgtactagattcgaaggttttgaaaggtgtgatgctaaa 1705
Query: 356 taaagatgtggtgcatccaaaaatgtctcgtttaatagaaaatcctcgcgtcttgttact 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1706 taaagatgtggtgcatccaaaaatgtctcgtttaatagaaaatcctcgcgtcttgttact 1765
Query: 416 agattgtccattggaatacaagaaaggtgaatctcaaactaatattgaaattacaaacga 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1766 agattgtccattggaatacaagaaaggtgaatctcaaactaatattgaaattacaaacga 1825
Query: 476 agatgactggaatagaatcctacagatcgaagaagaacaggtccgtttaatgtgtgaaca 535
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826 agatgactggtatagaatcctacagatcgaagaagaacaggtccgtttaatgtgtgaaca 1885
Query: 536 aatccttacagtaaaaccaaacgttgtcataactgaaaagggtgtgtctgatttggcaca 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1886 aatccttacagtaaaaccaaacgttgtcataactgaaaagggtgtgtctgatttggcaca 1945
Query: 596 gcattatcttttgaaaggtggatgtagtgttttgagaagagtgaagaaatcggacaataa 655
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 gcattatcttttgataggtggatgtagtgttttgagaagagtgaagaaatcggacaataa 2005
Query: 656 cagaattgcaagggtcactggtgcaactattgttaaccgtgttgaggacttgaaagaaag 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2006 cagaattgcaagggtcactggtgcaactattgttaaccgtgttgaggacttgaaagacag 2065
Query: 716 tgatgtcggtaatgacgctggtgtctttagagttgaattaattgggtgatgaatatttca 775
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2066 tgatgtcggtaatgacgctggtgtctttagagttgaattaatt-ggtgatgaatatttca 2124
Query: 776 ctttcctagatgattgcaaaaatccataggcgtgcactattatgcttagaggagcttcca 835
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2125 ctttcctagatgattgcaaaaatccaaaggcgtgcactattatgcttagaggagcttcca 2184
Query: 836 aggacatcttgaacgaaattgactgaaacttac-agaagctatggcagttgcacgtaatg 894
||||||||||||||||||||||| || |||||| ||| ||||||||||||||||||||||
Sbjct: 2185 aggacatcttgaacgaaattgacagatacttacaagatgctatggcagttgcacgtaatg 2244
Query: 895 ttatgctat 903
|||||||||
Sbjct: 2245 ttatgctat 2253
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6925
Number of Sequences: 1807
Number of extensions: 6925
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)