BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH02FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1659 1233 0.0
>3x_Contig1659
Length = 17570
Score = 1233 bits (622), Expect = 0.0
Identities = 718/738 (97%), Gaps = 9/738 (1%)
Strand = Plus / Minus
Query: 86 atgccatcatgactcactttatgcattgttggattcactaagcatgctgtttgatagtgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6485 atgccatcatgactcactttatgcattgttggattcactaagcatgctgtttgatagtgt 6426
Query: 146 atctgattttgagacaagaaagtacgatccgagattcgagtttaccttgagaactagtgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6425 atctgattttgagacaagaaagtacgatccgagattcgagtttaccttgagaactagtgg 6366
Query: 206 tatcaaagtgttgttaacggattctgaagagtggagaaaatccacttttgaaagattagt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6365 tatcaaagtgttgttaacggattctgaagagtggagaaaatccacttttgaaagattagt 6306
Query: 266 tattgccgctagggaatggaccaagatcttattacgtacttctaatcaagatggtaagat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6305 tattgccgctagggaatggaccaagatcttattacgtacttctaatcaagatggtaagat 6246
Query: 326 cttactacagtcatatattaccgacgttactgatttgcagaacaccaacagtgtagaata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6245 cttactacagtcatatattaccgacgttactgatttgcagaacaccaacagtgtagaata 6186
Query: 386 tggtgtttcttttgctcttgaactagcaggtacgattttatctgccgaccgtgagctatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6185 tggtgtttcttttgctcttgaactagcaggtacgattttatctgccgaccgtgagctatc 6126
Query: 446 aaaaatcggttataccaacataaacgtgaaaccaaacagtttgtcaggattcttgtcaca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6125 aaaaatcggttataccaacataaacgtgaaaccaaacagtttgtcaggattcttgtcaca 6066
Query: 506 acatgcatggagatctaaaattctcaccgaaagaagtaccatgtctttctctgaagacat 565
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 6065 acatgcatggagatctaaaattctcaccgaaagaagtaccatgtcttctcctgaagacat 6006
Query: 566 taacaccgaacgtgttaatttgaagaacagtattgtgacgaagttagttgccaatcaaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6005 taacaccgaacgtgttaatttgaagaacagtattgtgacgaagttagttgccaatcaaga 5946
Query: 626 gatagacgatgtctccattacggactttttaagtctatgcggtgtcttgctta-tatgag 684
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 5945 gatagacgatgtctccattacggacttcttaagtctatgcggtgtcttgcttattatgag 5886
Query: 685 acgaggcg-attagcgtccctaattta-gaccttggatctattccc-tccaaacgttcca 741
|||||||| || ||||||||||||||| ||||||| |||||||||| |||||||||||||
Sbjct: 5885 acgaggcgaatcagcgtccctaatttatgaccttgtatctattcccttccaaacgttcca 5826
Query: 742 cag-aatactatg-aagtggcttc-aatgtttgggtttccttcatc-aggaacgtaaaga 797
||| ||||||||| |||||||| | ||||||||| |||| |||||| |||| ||||||||
Sbjct: 5825 cagcaatactatgaaagtggctacaaatgtttggctttcgttcatcaaggagcgtaaaga 5766
Query: 798 agttg-acatttgcttgt 814
|||| ||||||||||||
Sbjct: 5765 tgttgcacatttgcttgt 5748
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5488
Number of Sequences: 1807
Number of extensions: 5488
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)