BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH03FM1.SCF screened BAC_end
(980 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1098 0.0
>3x_Contig1517
Length = 8289
Score = 1098 bits (554), Expect = 0.0
Identities = 653/678 (96%), Gaps = 6/678 (0%)
Strand = Plus / Plus
Query: 89 tgaatcatctttggacctgctcatgtatggcaattgagctatgttccatactcccccatt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5361 tgaatcatctttggacctgctcatgtatggcaattgagctatgttccatactcccccatt 5420
Query: 149 ttctaatgcttctttcgatactaaacaatccatcactgaatcttatcgcgatagtttgaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5421 ttctaatgcttctttcgatactaaacaatccatcactgaatcttatcgcgatagtttgaa 5480
Query: 209 ttcgacgatttccaataatagcgatgcaaagaaaccgaatgtcatgcttcaaactgccag 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5481 ttcgacgatttccaataatagcgatgcaaagaaaccgaatgtcatgcttcaaactgccag 5540
Query: 269 cacatcggcacctccatcaccagaactaccaatagaatcttcagaatccaatgatgattt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5541 cacatcggcacctccatcaccagaactaccaatagaatcttcagaatccaatgatgattt 5600
Query: 329 gattcccattgctagtatacctgatgaattgatgaaattgattgatttgttcattgatga 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5601 gattcccattgctagtatacctgatgaattgatgaaattgattgatttgttcattgatga 5660
Query: 389 tttgaaacagcctaaatattccaggcctttaatgattacacaattatctcagatattcca 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5661 tttgaaacagcctaaatattccaggcctttaatgattacacaattatctcagatattcca 5720
Query: 449 aaggttttatgagagatttgatagatcttgccaacaacattttaatgcattagcctcgcc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5721 aaggttttatgagagatttgatagatcttgccaacaacattttaatgcattagcctcgcc 5780
Query: 509 tggaagtgtgaatgttatgctcaacgcgagagaaacgagaaatagtggattgagtagtat 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5781 tggaagtgtgaatgttatgctcaacgcgagagaaacgagaaatagtggattgagtagtat 5840
Query: 569 ctttaacagatccagaaatagtagttttcgaatta-ccgctttagaaccagaactagact 627
||| ||||||||||||| |||||||||||||| || | || | ||||| |||||||||
Sbjct: 5841 cttcaacagatccagaagtagtagttttcgaaatagcagcataagaacaagaactagaac 5900
Query: 628 tatttctgaacagaattttcagcaattgttgacttcagaagaataatcccatcaaattaa 687
|| |||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct: 5901 taattctgaacagaattatcagcaattgttgactccagaagaaatatcccatcaaattaa 5960
Query: 688 gctgcaagaaggct-attatttccaaacggaccagattatgggatttgggtggaatgcga 746
|||||||| ||||| || || || |||||||||||||||| ||||||| || ||||||||
Sbjct: 5961 gctgcaag-aggctaataatatcaaaacggaccagattat-ggatttgtgt-gaatgcga 6017
Query: 747 aaaatttcaagaaaatac 764
|| | |||||||||||||
Sbjct: 6018 aata-ttcaagaaaatac 6034
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8191
Number of Sequences: 1807
Number of extensions: 8191
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)