BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH03RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig472 1306 0.0
>3x_Contig472
Length = 1547
Score = 1306 bits (659), Expect = 0.0
Identities = 721/735 (98%), Gaps = 5/735 (0%)
Strand = Plus / Minus
Query: 53 actttttctcgattcaagtgaagtccgcgttttctcttttttctcatagtcattatatgt 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 actttttctcgattcaagtgaagtccgcgttttctcttttttctcatagtcattatatgt 684
Query: 113 aaacgttccgtaatttgaagtcatcaacatcttctctagttcctcttctggaatctgtgt 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaacgttccgtaatttgaagtcatcaacatcttctctagttcctcttctggaatctgtgt 624
Query: 173 acctttattcataccggcaccaattgaatgtagaattacagctctaaaaggtggccacca 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acctttattcataccggcaccaattgaatgtagaattacagctctaaaaggtggccacca 564
Query: 233 agtatggaattcgttacaccattgtttcatcacagttgcgggacaaacgacaagtacagg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agtatggaattcgttacaccattgtttcatcacagttgcgggacaaacgacaagtacagg 504
Query: 293 gccattcaattttcgggagtggtgcaaagtggcaagaaatgcaataatttgaatcgtttt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gccattcaattttcgggagtggtgcaaagtggcaagaaatgcaataatttgaatcgtttt 444
Query: 353 acctagtcccatctcatctcctattatgccaccgcatccttgttgataaagctcacatag 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acctagtcccatctcatctcctattatgccaccgcatccttgttgataaagctcacatag 384
Query: 413 ccattgcacacatgttttttgatagggaaatagcaaagggaatatatcaccaggtaccat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccattgcacacatgttttttgatagggaaatagcaaagggaatatatcaccaggtaccat 324
Query: 473 gaaatcttcactgatattggcgtctgaaatttttggatgtggtttcaaccattctggaat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaaatcttcactgatattggcgtctgaaatttttggatgtggtttcaaccattctggaat 264
Query: 533 atccggttggttatcgtaatcgcgatctttacttctattggctacccacttcttttatct 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 263 atccggttggttatcgtaatcgcgatctttacttctattggctacccacttctttaatct 204
Query: 593 ttgttgataatgatgctcgtcaccgtcatcaatagcctctgcaggtttacgaattacatc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttgttgataatgatgctcgtcaccgtcatcaatagcctctgcaggtttacgaattacatc 144
Query: 653 gaggtttccagctgattcgttaaaaagttcttctgaatcacttataaaatcagccttggc 712
||| || |||||||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct: 143 gagtttcccagctgattcgtttaaaagttcttctgaatcacttataaaatcagcctcgtc 84
Query: 713 ttcacctttgaatcttcttcctcgtcaatggtcttttaacatttgtcggttcagctagga 772
|||| ||||| ||||||||||||||||||| || ||||||||||||| |||||||||| |
Sbjct: 83 ttca-ctttg-atcttcttcctcgtcaatgttc-tttaacatttgtc-gttcagctagta 28
Query: 773 aggaatgatttagat 787
| || ||||||||||
Sbjct: 27 a-gattgatttagat 14
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7757
Number of Sequences: 1807
Number of extensions: 7757
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)