BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH04FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 434 e-121
3x_Contig304 143 7e-34
>3x_Contig1778
Length = 27694
Score = 434 bits (219), Expect = e-121
Identities = 371/414 (89%), Gaps = 7/414 (1%)
Strand = Plus / Plus
Query: 499 ttatactggatctcttctgaattgtctccgaattttcttggcggagaggtcctttcccaa 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttatactggatctcttctgaattgtctccgaattttcttggcggagaggtcctttcccaa 60
Query: 559 tctttcaatatttcttctggagtcttgacgcctagtgcctcataataaggttccaaatca 618
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 tctttcaatatttcttctggagtcttgacgcctagtgcctcataataagaatccaaatca 120
Query: 619 atgtctgacatgacctgcacacactttaaacacctatattctctccgtggttctttcgtt 678
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 121 atgtctgacatgacctgcacacacttaaaacacctatattctctccgtggttctttcgtt 180
Query: 679 cgacgaatatagatctttgggtttacacaacgaaatagtaagt-aattataccggtttaa 737
|||||||||||||||||||| || ||||||||||||||||||| ||| ||||| | ||||
Sbjct: 181 cgacgaatatagatctttggattaacacaacgaaatagtaagtaaataatacc-gcttaa 239
Query: 738 tccctcgatgggaat-tgatactggt-aaattaacaatgaattctttgggtgatttatgg 795
| |||||||| |||| |||||||| | || ||| ||||| |||||||| ||||||||| |
Sbjct: 240 ttcctcgatgtgaatctgatactgctcaatttatcaatgtattctttgtgtgatttatcg 299
Query: 796 ccttaagctgaccagaattgtgccccccctttaaaactttattggcttaaaaaacacccg 855
||| |||||| ||||||||| | | |||| ||| ||| |||| || || ||||||| |
Sbjct: 300 tcttgagctgagcagaattgtcgcgcaccttaaaatcttaattgcctaaagaaacacctg 359
Query: 856 gtggggaattaatttcccatggtttttttattttgctttcaaaatttcaactta 909
|| | ||||| ||||||| |||||||| |||| |||||||||||||||||
Sbjct: 360 ttgtg--attaaattcccat-gtttttttcatttgacttcaaaatttcaactta 410
>3x_Contig304
Length = 1230
Score = 143 bits (72), Expect = 7e-34
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 85 cgtgttaacggtaaaacagaatggtcaaaattttctcgaggatcgtaaattgtaataccg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgtgttaacggtaaaacagaatggtcaaaattttctcgaggatcgtaaattgtaataccg 13
Query: 145 atttctgttacg 156
||||||||||||
Sbjct: 12 atttctgttacg 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6593
Number of Sequences: 1807
Number of extensions: 6593
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 2
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)