BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH04RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1725 1124 0.0
3x_Contig1560 470 e-132
>3x_Contig1725
Length = 17473
Score = 1124 bits (567), Expect = 0.0
Identities = 618/632 (97%), Gaps = 5/632 (0%)
Strand = Plus / Plus
Query: 274 cgttgttgatatggttgctgtccctagtgaagtagcacaactggatattttttcaaactc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 cgttgttgatatggttgctgtccctagtgaagtagcacaactggatattttttcaaactc 77
Query: 334 cactggtgctcctacacgcaaagaggcgctcaatacgtctgttcccttcgtttcgacaca 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 cactggtgctcctacacgcaaagaggcgctcaatacgtctgttcccttcgtttcgacaca 137
Query: 394 tactatcggaattttgtcagctaaattataccgttgcaaacccaaaatcaacccgttata 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tactatcggaattttgtcagctaaattataccgttgcaaacccaaaatcaacccgttata 197
Query: 454 tagacctccgcctccaaaactgcaaacaatacctttaattttggttataggtatttttga 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tagacctccgcctccaaaactgcaaacaatacctttaattttggttataggtatttttga 257
Query: 514 actagccaagacatccatgatttcatccaccataaaggaatggccttcccaaattagcgg 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 actagccaagacatccatgatttcatccaccataaaggaatggccttcccaaattagcgg 317
Query: 574 attatcgaaaggatggctgtaaattggctcgtatttaaaggaatcaagtttcttcataag 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 attatcgaaaggatggctgtaaattggctcgtatttaaaggaatcaagtttcttcataag 377
Query: 634 gtgctccttcatgaaagaatctgcctctttccaatggttaccatgaacaacaacatctgc 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtgctccttcatgaaagaatctgcctctttccaatggttaccatgaacaacaacatctgc 437
Query: 694 gccgtnagagcgaatcttttctataattcttggacgtgttgcattcgacacaactactgt 753
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gccgtaggagcgaatcttttctataattcttggacgtgttgcattcgacacaactactgt 497
Query: 754 acagggnaaacgttc-attcgaggggacgc-accgncgncgncaatccagcgttaccgnc 811
|||||| ||||||| |||||| ||||||| |||| || || |||||||||||||||| |
Sbjct: 498 acaggg--aacgttcaattcga-gggacgcaaccgccgccgccaatccagcgttaccgcc 554
Query: 812 agagctagcaaacacgtgaccgattttttcaggcgaggatttctttatttcttctacctt 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agagctagcaaacacgtgaccgattttttcaggcgaggatttctttatttcttctacctt 614
Query: 872 tgnagagattaaatgttcgatacctttacttt 903
|| ||||||||||||| |||||||| ||||||
Sbjct: 615 tgtagagattaaatgtccgatacctctacttt 646
>3x_Contig1560
Length = 9209
Score = 470 bits (237), Expect = e-132
Identities = 244/245 (99%), Gaps = 1/245 (0%)
Strand = Plus / Minus
Query: 48 tagatgacccaccacaaccgatcaagatgacataatcatcatctttaatgtctgaaccga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagatgacccaccacaaccgatcaagatgacataatcatcatctttaatgtctgaaccga 186
Query: 108 gaatattttgtagtttatcgatattatacccgaagtataacgttgccccacacccaggtt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gaatattttgtagtttatcgatattatacccgaagtataacgttgccccacacccaggtt 126
Query: 168 ccgcaactatgttggtatcgttagaaaattgaaggcaagttgaaatcacttcagtatcag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ccgcaactatgttggtatcgttagaaaattgaaggcaagttgaaatcacttcagtatcag 66
Query: 228 agatgacagctgacttgcttccgtgacgtttcacatttt-ggtaagccgttgttgatatg 286
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 65 agatgacagctgacttgcttccgtgacgtttcacattttgggtaagccgttgttgatatg 6
Query: 287 gttgc 291
|||||
Sbjct: 5 gttgc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5871
Number of Sequences: 1807
Number of extensions: 5871
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)