BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH05FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1253 1540 0.0
>3x_Contig1253
Length = 5628
Score = 1540 bits (777), Expect = 0.0
Identities = 826/838 (98%), Gaps = 4/838 (0%)
Strand = Plus / Minus
Query: 86 ttgtaaagttggccttttaaaaagcaaatacttctatgacattgcttctgaaatcgctgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2461 ttgtaaagttggccttttaaaaagcaaatacttctatgacattgcttctgaaatcgctgt 2402
Query: 146 ccttgtgttacatccaaatttttgggtgcgagagtatactatgctactattgatagaaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2401 ccttgtgttacatccaaatttttgggtgcgagagtatactatgctactattgatagaaat 2342
Query: 206 ggcatcgaaactttcaaagcctgagctgtactgtatgatgtacccgatcatcaaaccatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2341 ggcatcgaaactttcaaagcctgagctgtactgtatgatgtacccgatcatcaaaccatt 2282
Query: 266 ttttgaatttgatgttgaaatgacgtgggagtctctattgattagctcaaaaaaaccagt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2281 ttttgaatttgatgttgaaatgacgtgggagtctctattgattagctcaaaaaaaccagt 2222
Query: 326 ttccagaaatgtctacaatcttttatgtagttggacattaagatcatcgaagtcgctgtt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2221 ttccagaaatgtctacaatcttttatgtagttggacattaagatcatcgaagtcgctgtt 2162
Query: 386 ttggaagcatttgccgaccaaaaatgtaaactcttttggtaataatactgtggaattcat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2161 ttggaagcatttgccgaccaaaaatgtaaactcttttggtaataatactgtggaattcat 2102
Query: 446 atctaagaatttttctgtgaataattatggctttcagactaatttcaagccctcaaaatc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 atctaagaatttttctgtgaataattatggctttcagactaatttcaagccctcaaaatc 2042
Query: 506 gcatgtaacttctattgctaatattgaaatacccttgacaactgaggacaagaactggat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 gcatgtaacttctattgctaatattgaaatacccttgacaactgaggacaagaactggat 1982
Query: 566 agacaagataaaaaatgtggggttgtcagagacagaattatggaagctagctgcactaag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 agacaagataaaaaatgtggggttgtcagagacagaattatggaagctagctgcactaag 1922
Query: 626 accatacgtctttcgggtttcaaagatgttatccaggaaacctgaaactcaatccaacga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 accatacgtctttcgggtttcaaagatgttatccaggaaacctgaaactcaatccaacga 1862
Query: 686 atatgatgatattttaactgaaagaagagtctttggactccctcanactgttctttttga 745
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1861 atatgatgatattttaactgaaagaagagtctttggactccctcaaactgttctttttga 1802
Query: 746 cattgaagctgttgactccagcaaagaacanaatacacatgtcatattaaaacatataac 805
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1801 cattgaagctgttgactccagcaaagaacaaaatacacatgtcatattaaaacatataac 1742
Query: 806 ttcaaaggaccatatatcagggaaaaatgaaatatactnctcctcatattcttcacaggc 865
|||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct: 1741 ttcaaaggacaatatatcaggg-aaaatgaaatatacttctcctcatattcttcaacggc 1683
Query: 866 cgatcgatttgaacggatcactcatcctttactccc-aggctcatnccggttataaat 922
|||||||| |||||||||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 1682 cgatcgatatgaacggatcactcatcc-ttactcccaagtctcat-ccggttataaat 1627
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7028
Number of Sequences: 1807
Number of extensions: 7028
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)