BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH05RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 1713 0.0
>3x_Contig1761
Length = 23186
Score = 1713 bits (864), Expect = 0.0
Identities = 867/868 (99%)
Strand = Plus / Minus
Query: 45 ttttttttaatatatacaaattacagcgctctgctacaaaataatgataaattgaatctg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19240 ttttttttaatatatacaaattacagcgctctgctacaaaataatgataaattgaatctg 19181
Query: 105 aaattatatgccaaatgttcgttatagtgagctatcagtaactgattagctcaaacttga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19180 aaattatatgccaaatgttcgttatagtgagctatcagtaactgattagctcaaacttga 19121
Query: 165 ttctaatgcttgaattggtcgttaatgatcattgactaaggtattaggagtcttactaac 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19120 ttctaatgcttgaattggtcgttaatgatcattgactaaggtattaggagtcttactaac 19061
Query: 225 ttcagaattagtttttcttagtggcctcggtggattcactttcggttctggcattatgtg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19060 ttcagaattagtttttcttagtggcctcggtggattcactttcggttctggcattatgtg 19001
Query: 285 gcttcttttcgccatcttggggggcagctttttcagtttgacttacagttttggcatcaa 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19000 gcttcttttcgccatcttggggggcagctttttcagtttgacttacagttttggcatcaa 18941
Query: 345 cagcatctaaacttagttcgtccttaactctaacaactgcatccttttcttgttgctctt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18940 cagcatctaaacttagttcgtccttaactctaacaactgcatccttttcttgttgctctt 18881
Query: 405 cttccttcatgatttccacttgttccttcaactgtgccatcttagatttgttagtagcag 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18880 cttccttcatgatttccacttgttccttcaactgtgccatcttagatttgttagtagcag 18821
Query: 465 aatcctcttcaacaacattgaccttaacttcatggtacaactcgtctggaataccagata 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18820 aatcctcttcaacaacattgaccttaacttcatggtacaactcgtctggaataccagata 18761
Query: 525 agacgtcacataaggcgtcatacaacgtcttcttagaaccaatatcaccgtaagtgtatg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18760 agacgtcacataaggcgtcatacaacgtcttcttagaaccaatatcaccgtaagtgtatg 18701
Query: 585 cggtagccataactagtaaagttgatggaatcttatccttcagcctcatgtttaaccaaa 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18700 cggtagccataactagtaaagttgatggaatcttatccttcagcctcatgtttaaccaaa 18641
Query: 645 tcttcaagttatcacgtagaacactttcttccacgttcaagtttctgatacctctagaag 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18640 tcttcaagttatcacgtagaacactttcttccacgttcaagtttctgatacctctagaag 18581
Query: 705 cacaagccgtacgcaattcaatagcgtctaatgattcaactccttcgtaatagatagcca 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18580 cacaagccgtacgcaattcaatagcgtctaatgattcaactccttcgtaatagatagcca 18521
Query: 765 aatcatccgtctttaactctaacatcttgttacggatacggtaacgtaacatgacatcgg 824
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 18520 aatcatccgtctttaactctaacatcttgtaacggatacggtaacgtaacatgacatcgg 18461
Query: 825 taccaaatggttgcaagttaatgtatttagcaatggcgactaaatatggtctggtcaagt 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18460 taccaaatggttgcaagttaatgtatttagcaatggcgactaaatatggtctggtcaagt 18401
Query: 885 tatccaacacagtatcgtctgtaaatag 912
||||||||||||||||||||||||||||
Sbjct: 18400 tatccaacacagtatcgtctgtaaatag 18373
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6707
Number of Sequences: 1807
Number of extensions: 6707
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)