BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH06FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1726 1191 0.0
>3x_Contig1726
Length = 20144
Score = 1191 bits (601), Expect = 0.0
Identities = 741/772 (95%), Gaps = 12/772 (1%)
Strand = Plus / Minus
Query: 88 acgttcctcgttcttttatagaatcattagagaataatgataaccttgatgataatttca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 acgttcctcgttcttttatagaatcattagagaataatgataaccttgatgataatttca 779
Query: 148 atattaaatcaaagacaacgcctgagtgaaattgtcaacgaagacatttaaaactgtaat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 atattaaatcaaagacaacgcctgagtgaaattgtcaacgaagacatttaaaactgtaat 719
Query: 208 aatagtaaaaggatattttgtttaacatttttttcattctcatggcggacagactaattt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aatagtaaaaggatattttgtttaacatttttttcattctcatggcggacagactaattt 659
Query: 268 ttattaaaataataagtagtttaatgtaacaatgaggattatatgccattgtttattgag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttattaaaataataagtagtttaatgtaacaatgaggattatatgccattgtttattgag 599
Query: 328 atcctttgtatgatttccatatttcgaaccatcgtgccatttctctatattgagaaaggt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atcctttgtatgatttccatatttcgaaccatcgtgccatttctctatattgagaaaggt 539
Query: 388 tcacagtaggaataatcttatcccacttaagttttgttgaaaacagacataagtccttaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tcacagtaggaataatcttatcccacttaagttttgttgaaaacagacataagtccttaa 479
Query: 448 atgaagaatgttcggaatacgggacgttgaaatggtagattttgccctgcgaacgttttt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atgaagaatgttcggaatacgggacgttgaaatggtagattttgccctgcgaacgttttt 419
Query: 508 gtttggtgaaataatcaatggcaaatggtgtctctcccgacaatgtgtccttaacccagt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gtttggtgaaataatcaatggcaaatggtgtctctcccgacaatgtgtccttaacccagt 359
Query: 568 tttttctttcaa-ttcatcccaaagtgtatatgacttatcatatttggtttgaaaaagtc 626
|||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 358 ttttcctttcaaattcatcccaaagtgtatatgacttatcatatt-ggtttgaaaaagtc 300
Query: 627 cagccagtgggtcgaaataccactattgaatcgaacatatttggacaactgagaaagata 686
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 299 cagccagtgggtcgaaataccactatagaatcgaacatatt-ggacaactgagaaagata 241
Query: 687 tttatccaaatttgtgtgcatagcaacccaattgacatttggatgacttatggtccaggg 746
||||||||||| |||||||||||||||| | | ||||| ||||||||||||||| || |
Sbjct: 240 tttatccaaatctgtgtgcatagcaaccaagtgaacatt-ggatgacttatggtc-agtg 183
Query: 747 gtgaattaaaccttttggaaaccattgagatgtatttgttttacccagctgatattttgg 806
|||| | | ||| | |||||||||| |||||||||| |||| ||| |||||||||||||
Sbjct: 182 gtgagt-agaccctctggaaaccat-gagatgtatt-gtttcacc-agctgatattttg- 128
Query: 807 tatgccggacaatanaattgggtttttaaattttttggcaatggaaatagcc 858
||||| | ||| || | ||| |||||||| ||| ||||||||||||||||||
Sbjct: 127 tatgcggtaca-tagagttgtgtttttaa-tttcttggcaatggaaatagcc 78
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8837
Number of Sequences: 1807
Number of extensions: 8837
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)