BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH06RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1464 1302 0.0
3x_Contig540 236 7e-62
3x_Contig1088 214 2e-55
3x_Contig1769 208 2e-53
3x_Contig1709 204 2e-52
3x_Contig1605 180 3e-45
3x_Contig1799 172 8e-43
3x_Contig1787 155 2e-37
3x_Contig1803 143 7e-34
3x_Contig1446 143 7e-34
3x_Contig837 133 7e-31
3x_Contig1 109 1e-23
>3x_Contig1464
Length = 11693
Score = 1302 bits (657), Expect = 0.0
Identities = 778/803 (96%), Gaps = 13/803 (1%)
Strand = Plus / Plus
Query: 50 taatggaagatgttggcagataggcattgtggcagaggagcttgagaggggggaagaaga 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4760 taatggaagatgttggcagataggcattgtggcagaggagcttgagaggggggaagaaga 4819
Query: 110 ttaatatctgagttagatatgattattccacgttttaaaaaaaattcaaggtagtttttg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4820 ttaatatctgagttagatatgattattccacgttttaaaaaaaattcaaggtagtttttg 4879
Query: 170 tgtcaaagttcatactagggttttgactgtttttagaactatcacttggtatatgtagct 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4880 tgtcaaagttcatactagggttttgactgtttttagaactatcacttggtatatgtagct 4939
Query: 230 ggcatgtcactttgcctggcatattcaaacaaacatcttgaatatttattttacttacat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4940 ggcatgtcactttgcctggcatattcaaacaaacatcttgaatatttattttacttacat 4999
Query: 290 gtaaagaatggccatatgaatacctgccttctgtggatcacataaggttcttttcaaagc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5000 gtaaagaatggccatatgaatacctgccttctgtggatcacataaggttcttttcaaagc 5059
Query: 350 ctacagtagcatttttgtaatatcgttttgacagaataaatagacaataacaatggcatt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5060 ctacagtagcatttttgtaatatcgttttgacagaataaatagacaataacaatggcatt 5119
Query: 410 tggattgtcagaagccgatcttaagaagctgactaggacatcctgcttgaactttcgacc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5120 tggattgtcagaagccgatcttaagaagctgactaggacatcctgcttgaactttcgacc 5179
Query: 470 cactttgagccccaacttccagttaaaaaccaactttatcatatctttgcgaatttggcg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5180 cactttgagccccaacttccagttaaaaaccaactttatcatatctttgcgaatttggcg 5239
Query: 530 aatcctgcgttcgcccaatggcacaaccacatataaggacaaagtcaagagctgttgaaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5240 aatcctgcgttcgcccaatggcacaaccacatataaggacaaagtcaagagctgttgaaa 5299
Query: 590 cggatcataaactatgatcgggtaactaccaatgntataggcggttaagtatcaagatga 649
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5300 cggatcataaactatgatcgggtaactaccaatgtaataggcggttaagtatcaagatga 5359
Query: 650 tacataanggattgtttctagttgaaacatcattaaccaatctgaattattttattatga 709
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct: 5360 tacataa-ggattgtttctagttgaaacatcattaaccaatctgaattattatataagga 5418
Query: 710 ggcatttagatctgaacaaagaaccatcgacacagtcatgcccagattcgcca-gtacat 768
|||| |||||||||||| ||| |||||||||||||||||| ||||| |||||| ||||||
Sbjct: 5419 ggca-ttagatctgaac-aaggaccatcgacacagtcatg-ccaga-tcgccaggtacat 5474
Query: 769 taacatacccttactggatatatagcctattaaaccctatgggnattcatcaggatacca 828
||||||| | |||| ||||||||| ||| ||||| |||||| |||||||| |||||||
Sbjct: 5475 caacatacac-tactagatatatag-ctaataaacactatgg--attcatca-gatacca 5529
Query: 829 caagattttgtaaacaacaacac 851
||||| ||| ||||||||||||
Sbjct: 5530 -aagatcttg-aaacaacaacac 5550
>3x_Contig540
Length = 1644
Score = 236 bits (119), Expect = 7e-62
Identities = 160/170 (94%), Gaps = 3/170 (1%)
Strand = Plus / Minus
Query: 582 tgttgaaacggatcataaactatgatcgggtaactaccaatgntataggcggttaagtat 641
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1384 tgttgaaacggatcataaactatgatcgggtaactaccaatgtaataggcggttaagtat 1325
Query: 642 caagatgatacataanggattgtttctagttgaaacatcattaaccaatctgaattattt 701
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1324 caagatgatacataa-ggattgtttctagttgaaacatcattaaccaatctgaattatta 1266
Query: 702 tattatgaggcatttagatctgaacaaagaaccatcgacacagtcatgcc 751
||| | |||||| |||||||||||| ||| |||||| |||||||||||||
Sbjct: 1265 tataaggaggca-ttagatctgaac-aaggaccatcaacacagtcatgcc 1218
>3x_Contig1088
Length = 4585
Score = 214 bits (108), Expect = 2e-55
Identities = 158/171 (92%), Gaps = 3/171 (1%)
Strand = Plus / Minus
Query: 581 ctgttgaaacggatcataaactatgatcgggtaactaccaatgntataggcggttaagta 640
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 1394 ctgttgaaacggatcataaaccatgatcgggtaactaccaatgtaataggcggttaagta 1335
Query: 641 tcaagatgatacataanggattgtttctagttgaaacatcattaaccaatctgaattatt 700
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1334 tcaagatgatacataa-ggattgtttctagttgaaacatcattaaccaatctgagttatt 1276
Query: 701 ttattatgaggcatttagatctgaacaaagaaccatcgacacagtcatgcc 751
||| | |||||| |||||||||||| ||| |||||| |||| ||||||||
Sbjct: 1275 atataaggaggca-ttagatctgaac-aaggaccatcaacacggtcatgcc 1227
>3x_Contig1769
Length = 25795
Score = 208 bits (105), Expect = 2e-53
Identities = 155/168 (92%), Gaps = 3/168 (1%)
Strand = Plus / Plus
Query: 582 tgttgaaacggatcataaactatgatcgggtaactaccaatgntataggcggttaagtat 641
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 24178 tgttgaaacggatcataaactatgatcgggtaactaccaatataataggcggttaagtat 24237
Query: 642 caagatgatacataanggattgtttctagttgaaacatcattaaccaatctgaattattt 701
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 24238 caagatgatacataa-ggattgtttctagttgaaacatcattaaccaatctgagttatta 24296
Query: 702 tattatgaggcatttagatctgaacaaagaaccatcgacacagtcatg 749
||| | |||||| ||||||||| |||||| || ||| |||||||||||
Sbjct: 24297 tataaggaggca-ttagatctggacaaag-acgatcaacacagtcatg 24342
>3x_Contig1709
Length = 16948
Score = 204 bits (103), Expect = 2e-52
Identities = 153/166 (92%), Gaps = 3/166 (1%)
Strand = Plus / Plus
Query: 584 ttgaaacggatcataaactatgatcgggtaactaccaatgntataggcggttaagtatca 643
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 12498 ttgaaacggatcataaactatgatcgggtaactaccaatgtaataggcggttaagtatca 12557
Query: 644 agatgatacataanggattgtttctagttgaaacatcattaaccaatctgaattatttta 703
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 12558 agatgatacataa-ggattgtttctagttgaaacatcattaaccaatctgagttattata 12616
Query: 704 ttatgaggcatttagatctgaacaaagaaccatcgacacagtcatg 749
| | |||| | ||||||||| |||||| || ||| |||||||||||
Sbjct: 12617 taaggaggta-ttagatctggacaaag-acgatcaacacagtcatg 12660
>3x_Contig1605
Length = 12373
Score = 180 bits (91), Expect = 3e-45
Identities = 124/134 (92%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 582 tgttgaaacggatcataaactatgatcgggtaactaccaatgntataggcggttaagtat 641
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 50 tgttgaaacggatcataaactatgatcgggtaactaccaatgtaataggcggttaagtac 109
Query: 642 caagatgatacataanggattgtttctagttgaaacatcattaaccaatctgaattattt 701
||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 110 caagatgatacgtaa-ggattgtttctagttgaaacatcatcaaccaatctgagttatta 168
Query: 702 tattatgaggcatt 715
||| | ||||||||
Sbjct: 169 tataaggaggcatt 182
>3x_Contig1799
Length = 39855
Score = 172 bits (87), Expect = 8e-43
Identities = 123/134 (91%), Gaps = 1/134 (0%)
Strand = Plus / Minus
Query: 582 tgttgaaacggatcataaactatgatcgggtaactaccaatgntataggcggttaagtat 641
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 30302 tgttgaaacggatcataaactatgatcgggtaactaccaatgtaataggcggttaagtac 30243
Query: 642 caagatgatacataanggattgtttctagttgaaacatcattaaccaatctgaattattt 701
||||||||||| ||| ||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct: 30242 caagatgatacgtaa-ggattgtttctagttgatacatcatcaaccaatctgagttatta 30184
Query: 702 tattatgaggcatt 715
||| | ||||||||
Sbjct: 30183 tataaggaggcatt 30170
>3x_Contig1787
Length = 34189
Score = 155 bits (78), Expect = 2e-37
Identities = 105/113 (92%), Gaps = 1/113 (0%)
Strand = Plus / Minus
Query: 603 atgatcgggtaactaccaatgntataggcggttaagtatcaagatgatacataanggatt 662
|||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 14468 atgaccgggtaactaccaatgtaataggcggttaagtatcaagatgatacataa-ggatt 14410
Query: 663 gtttctagttgaaacatcattaaccaatctgaattattttattatgaggcatt 715
|||||||||||||||||||||||||||||||| ||||| ||| | ||||||||
Sbjct: 14409 gtttctagttgaaacatcattaaccaatctgagttattatataaggaggcatt 14357
>3x_Contig1803
Length = 52241
Score = 143 bits (72), Expect = 7e-34
Identities = 148/170 (87%), Gaps = 3/170 (1%)
Strand = Plus / Minus
Query: 582 tgttgaaacggatcataaactatgatcgggtaactaccaatgntataggcggttaagtat 641
|||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 35167 tgtttaaatggatcataaactatgatcgggtaactaccaatgtaataggcggttaagtat 35108
Query: 642 caagatgatacataanggattgtttctagttgaaacatcattaaccaatctgaattattt 701
||||||||||||||| || |||||| ||||| ||||||||| |||||||||||||
Sbjct: 35107 caagatgatacataacgg-gtgtttcggaatgaaatatcattaactaatctgaattatta 35049
Query: 702 tattatgaggcatttagatctgaacaaagaaccatcgacacagtcatgcc 751
||| | |||||| ||||||||| || ||| |||||| | |||||||||||
Sbjct: 35048 tataaggaggca-ttagatctggac-aaggaccatcaatacagtcatgcc 35001
>3x_Contig1446
Length = 10598
Score = 143 bits (72), Expect = 7e-34
Identities = 119/134 (88%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 582 tgttgaaacggatcataaactatgatcgggtaactaccaatgntataggcggttaagtat 641
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2589 tgttgaaacggatcataaactatgatcgggtaactaccaatgtaataggcggttaagtat 2648
Query: 642 caagatgatacataanggattgtttctagttgaaacatcattaaccaatctgaattattt 701
||||| ||||||||| || |||||| |||| |||||||||| |||||||||||||
Sbjct: 2649 caagaagatacataac-gagtgtttcggaatgaagcatcattaactaatctgaattatta 2707
Query: 702 tattatgaggcatt 715
||| | ||||||||
Sbjct: 2708 tataaggaggcatt 2721
>3x_Contig837
Length = 3290
Score = 133 bits (67), Expect = 7e-31
Identities = 97/103 (94%), Gaps = 3/103 (2%)
Strand = Plus / Plus
Query: 625 tataggcggttaagtatcaagatgatacataanggattgtttctagttgaaacatcatta 684
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 30 tataggcggtta-gtatcaagatgatacataa-ggattgtttctagttgaaacatcatta 87
Query: 685 accaatctgaattattttattatgaggcatttagatctgaaca 727
|||||||||||||||| ||| | |||||| |||||||||||||
Sbjct: 88 accaatctgaattattatataaggaggca-ttagatctgaaca 129
>3x_Contig1
Length = 735
Score = 109 bits (55), Expect = 1e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 587 aaacggatcataaactatgatcgggtaactaccaatgntataggcggttaagtatcaaga 646
|||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 1 aaacggttcataaactatgatcgggtaactatcaatgtaataggcggttaagtatcaaga 60
Query: 647 tgatacataa 656
||||||||||
Sbjct: 61 tgatacataa 70
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6976
Number of Sequences: 1807
Number of extensions: 6976
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 12
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)