BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH07FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1507 1314 0.0
>3x_Contig1507
Length = 11359
Score = 1314 bits (663), Expect = 0.0
Identities = 729/746 (97%), Gaps = 4/746 (0%)
Strand = Plus / Plus
Query: 86 attgttctgaatgtttcaaatgttgcaaatgtggtgaaaaaattaacgatcttaggtatg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7561 attgttctgaatgtttcaaatgttgcaaatgtggtgaaaaaattaacgatcttaggtatg 7620
Query: 146 caaagacaaagaaagggttattctgtataacttgtcatgaacgacttttagccaggaaga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7621 caaagacaaagaaagggttattctgtataacttgtcatgaacgacttttagccaggaaga 7680
Query: 206 agtaccatgaggagaagaagcgaagactaaagaaacagttgccgatcgttccatcgccca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7681 agtaccatgaggagaagaagcgaagactaaagaaacagttgccgatcgttccatcgccca 7740
Query: 266 aattaccagactcctcttcttcacttgacccgcagaagatggagttcagcagcgtggaga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7741 aattaccagactcctcttcttcacttgacccgcagaagatggagttcagcagcgtggaga 7800
Query: 326 ctgcgaataatagtaatttgaactcgagcttagatccggggctcgaactcacgccagaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7801 ctgcgaataatagtaatttgaactcgagcttagatccggggctcgaactcacgccagaaa 7860
Query: 386 gcaacccttattccgtagtttcatcaattgcaccggataggtctagttcacgacctgcaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7861 gcaacccttattccgtagtttcatcaattgcaccggataggtctagttcacgacctgcaa 7920
Query: 446 ctgcagagttgttgcagcataaccaccagcatgcagataataattacagtgaggatgtaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7921 ctgcagagttgttgcagcataaccaccagcatgcagataataattacagtgaggatgtaa 7980
Query: 506 taaaccaactgaaccaatcaccctctccacctccacaaaagtccattaccgctccaatag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7981 taaaccaactgaaccaatcaccctctccacctccacaaaagtccattaccgctccaatag 8040
Query: 566 atttctcaaagaaggatgctatagttaagtcaagctcgaatagtgtcattgcacaattct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8041 atttctcaaagaaggatgctatagttaagtcaagctcgaatagtgtcattgcacaattct 8100
Query: 626 tagatgatgagtaccatgatgacgacggtaatgtatcaatttcaa-acacacacanggat 684
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||
Sbjct: 8101 tagatgatgagtaccatgatgacgacggtaatgtatcaatttcaacaca-acacaaggat 8159
Query: 685 tcacaattagattaaatcttacagaacacgttggacaattctgagggagatactttacag 744
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8160 tcacaattagataaaatcttacagaacacgttggacaattctgaggaggatactttacag 8219
Query: 745 attagctctacttttcactcatccgataacctaccattttagcctaagcaaaatttccga 804
|| ||||||||||| |||||||||||||||||||| | ||||||||| ||| ||| ||
Sbjct: 8220 ataagctctactttcaactcatccgataacctacca-tctagcctaaggcaaaattcgga 8278
Query: 805 ttccagtgttatgaataactcgggcc 830
||||||||| ||| ||||||||||||
Sbjct: 8279 ttccagtgtaatg-ataactcgggcc 8303
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6285
Number of Sequences: 1807
Number of extensions: 6285
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)