BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH07RM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1264 1291 0.0
>3x_Contig1264
Length = 6524
Score = 1291 bits (651), Expect = 0.0
Identities = 794/826 (96%), Gaps = 12/826 (1%)
Strand = Plus / Minus
Query: 48 tgaaaagctgcgcgatatgaaggtgttacttgttggcgcaggtggaattggctgtgagct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2405 tgaaaagctgcgcgatatgaaggtgttacttgttggcgcaggtggaattggctgtgagct 2346
Query: 108 tttgaaggatttgattttgttggaaataggtgaaatccatatcgttgatttggacactat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2345 tttgaaggatttgattttgttggaaataggtgaaatccatatcgttgatttggacactat 2286
Query: 168 tgatttatcgaatttgaacagacagtttttatttaggaagagagatattaaacaacctaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2285 tgatttatcgaatttgaacagacagtttttatttaggaagagagatattaaacaacctaa 2226
Query: 228 aagtaatactgcaatgaaagcagttcaaaggttcagcaactctaaactagtttcatatca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2225 aagtaatactgcaatgaaagcagttcaaaggttcagcaactctaaactagtttcatatca 2166
Query: 288 gaataatatcatggatacagaaaagttcccactttcgtggtttgatcagttttcgattat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2165 gaataatatcatggatacagaaaagttcccactttcgtggtttgatcagttttcgattat 2106
Query: 348 atacaatgcattggacaatctagcggcaagaagatacgtcaataagatgtgtcagttcac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2105 atacaatgcattggacaatctagcggcaagaagatacgtcaataagatgtgtcagttcac 2046
Query: 408 taataaacctttgatcgaatctgggacttcgggattcgatggatacatacagccaatctt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2045 taataaacctttgatcgaatctgggacttcgggattcgatggatacatacagccaatctt 1986
Query: 468 cccaagtgtcactgaatgctttgattgcaccactaaggagacaccaactacgttcccggt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1985 cccaagtgtcactgaatgctttgattgcaccactaaggagacaccaactacgttcccggt 1926
Query: 528 ctgtaccattagatccacgccatcacagccaatccactgtgtggtttgggccaagaattt 587
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1925 ctgtaccattagatccacgccatcacagccaagccactgtgtggtttgggccaagaattt 1866
Query: 588 cctatttggccaac-ttttgcagaat-ctcagaagagaccgtaaatgatccaga-ttagg 644
|||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 1865 cctatttggccaactttttgcagaatcctcagaagagaccgtaaatgatcaagatttagg 1806
Query: 645 tactgatgattaagaagaaatcgnccg-atctaagaggagactaacgaattacatgctct 703
|||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct: 1805 tactgatgataaagaagaaatcgcccgcatcaaagaggagactaacgaattacatgctct 1746
Query: 704 tcagcagttagtcaagtccggcgatgagacg-aaatctcagat-tttttaagaaattggt 761
|||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||| |
Sbjct: 1745 ccagcagttagtcaagtccggcgatgagacgaaaatcacagatattttaaagaaattgtt 1686
Query: 762 cg-cgatgat-tcaattaacttctaaagattg-agatttttgggaaacca-agtgaaacc 817
|| ||||||| ||||| ||||||||||||||| | || ||||| |||| | |||||||||
Sbjct: 1685 cgtcgatgatatcaataaacttctaaagattgaaaatctttggaaaacgagagtgaaacc 1626
Query: 818 -acccctttaggggctttact-tcatctggaaatattccaacagat 861
|| |||||||| |||||||| |||||| ||||| |||||||||
Sbjct: 1625 aacacctttaggtgctttactaccatctgataatatcccaacagat 1580
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6540
Number of Sequences: 1807
Number of extensions: 6540
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)