BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH08FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1690 1191 0.0
>3x_Contig1690
Length = 13018
Score = 1191 bits (601), Expect = 0.0
Identities = 744/787 (94%), Gaps = 4/787 (0%)
Strand = Plus / Minus
Query: 86 ttaaagtcacgtgatcagaatgggaggagggattgattattacaattagtcgggagcaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8130 ttaaagtcacgtgatcagaatgggaggagggattgattattacaattagtcgggagcaaa 8071
Query: 146 gttatagtcggatgggggtatatcgggaacggaaggtatttcctttgacgatagttatga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8070 gttatagtcggatgggggtatatcgggaacggaaggtatttcctttgacgatagttatga 8011
Query: 206 tcagtgcttttaatagggtttttcttgtatgcctcaaaggataccaaatcatctcgaagt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8010 tcagtgcttttaatagggtttttcttgtatgcctcaaaggataccaaatcatctcgaagt 7951
Query: 266 gaaaaagtgaatcttttttgaaaaataatacagttgcccatctcagcattattcttgaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7950 gaaaaagtgaatcttttttgaaaaataatacagttgcccatctcagcattattcttgaca 7891
Query: 326 tctggatctacacgcacaagtactttacaattcaagtccaagaagctcaccacataaggg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7890 tctggatctacacgcacaagtactttacaattcaagtccaagaagctcaccacataaggg 7831
Query: 386 cagttggaccaattcagtcatgattctctcactcactgagccggtggttcctttagagta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7830 cagttggaccaattcagtcatgattctctcactcactgagccggtggttcctttagagta 7771
Query: 446 cactttggatctgaatgtggatcacaaacagccaaatttcaaaggacaattgacagttca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7770 cactttggatctgaatgtggatcacaaacagccaaatttcaaaggacaattgacagttca 7711
Query: 506 attaanacaacgtcagcctggtcaatcattcaataagttcaaatttcatttgtaacaatt 565
||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 7710 attaaaacaacgtcagcctggtcaatcattcaataagttcaaattccattgtaaacaatt 7651
Query: 566 gattgtcaccaaagttctattgagcgantaacccgtatctattttctatgatgcgaatga 625
||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct: 7650 gattgtcaccaaagttctattgagcgataaaccgttatctatttcctatgatgcgaatga 7591
Query: 626 acaaactgtggtctttctctt-agatgacccattggacattgcagatgatacccgcgagg 684
||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||
Sbjct: 7590 acaaactgt-gtctttctcttcagatgacccattgaacattgcagatgataccgcggagt 7532
Query: 685 taagaaatagttacatcggttaaagttaataccatcaagacttatcgcgaattgaccact 744
|||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 7531 taagaattagttacatcgg-taaagttaataccatcaagactcatcgcgaattgaccact 7473
Query: 745 gggttggtcaagacaaatttcatgaccgatccccttgaaatcagggacttttaacttttt 804
|||||| |||||||||||||||||| |||| || || |||||| |||| ||| || ||
Sbjct: 7472 gggttgttcaagacaaatttcatgagcgataccactggaatcagcgactcttacattctt 7413
Query: 805 tgaacttattcccaaactgtttttggtaaaatccattttcctttgcttcgaggagcccac 864
|||| || ||||| ||||||||| | | ||||||||||| ||||||||| ||||| |
Sbjct: 7412 gcaactcatacccaacctgtttttgct-agatccattttcccttgcttcgatgagccaaa 7354
Query: 865 ctcaaaa 871
|||||||
Sbjct: 7353 ctcaaaa 7347
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6815
Number of Sequences: 1807
Number of extensions: 6815
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)