BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH08RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1564 1205 0.0
>3x_Contig1564
Length = 11038
Score = 1205 bits (608), Expect = 0.0
Identities = 678/697 (97%), Gaps = 4/697 (0%)
Strand = Plus / Plus
Query: 47 agatctcaatgcaagttctatcatgacaggatgctttttttcttcgttc-caaattttga 105
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2258 agatctcaatgcaagttctatcatgacaggatgctttttttcttcgttcacaaattttga 2317
Query: 106 tttgatttgccgccttgacctataaggaaacagttgagatattagattgaaatctgtccc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2318 tttgatttgccgccttgacctataaggaaacagttgagatattagattgaaatctgtccc 2377
Query: 166 ccacattgataacgcctgataaaacttgatcatttcttcaatagtccatggatctgtaaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2378 ccacattgataacgcctgataaaacttgatcatttcttcaatagtccatggatctgtaaa 2437
Query: 226 ctgctgacgaccgtacgtagcagaattgtataaattttcgaatggattgttctgaatttt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2438 ctgctgacgaccgtacgtagcagaattgtataaattttcgaatggattgttctgaatttt 2497
Query: 286 ttctttagatgaattttcaagagacgcgttcttatgtctgtcgacaaccatagattcctc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2498 ttctttagatgaattttcaagagacgcgttcttatgtctgtcgacaaccatagattcctc 2557
Query: 346 atcaacaaccatagatccatctgcggccatcttcaattgaataccttgatggggtttctc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2558 atcaacaaccatagatccatctgcggccatcttcaattgaataccttgatggggtttctc 2617
Query: 406 atctggcacttccgtatcaaaaagatcctgggcggctttctttctttcctctttcaattg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2618 atctggcacttccgtatcaaaaagatcctgggcggctttctttctttcctctttcaattg 2677
Query: 466 tttttcttcttccgttactagttcattcaaggacttgaacntctttctagccatttctcg 525
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2678 tttttcttcttccgttactagttcattcaaggacttgaactcttttctagccatttctcg 2737
Query: 526 tagttccctgcgttttcttctccttttcatctttagcttggcagcttncttagccctgct 585
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 2738 tagttccctgcgttttcttctcctttcaatctttagcttggcagcttccttagccctgct 2797
Query: 586 aaaattttcagatatttcacctatgggaagcgttggtttacataagttcgccatagtaaa 645
|||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 2798 aaaattctcagatatttcacctatgggaagcgttggtttacataggtccgccatagtaaa 2857
Query: 646 gttttcttcgnctatcaagtatttggatgaaacttttgtccgcttttttcttttggaatc 705
|||||||||| |||||||||||||||||||| | |||||||||| ||||| |||||||||
Sbjct: 2858 gttttcttcgtctatcaagtatttggatgaatc-tttgtccgctattttc-tttggaatc 2915
Query: 706 atcttcaaattgggaatgggggtatttctgattaaga 742
||||||||||||| ||| || ||||||||||| ||||
Sbjct: 2916 atcttcaaattggtaat-ggtgtatttctgataaaga 2951
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9301
Number of Sequences: 1807
Number of extensions: 9301
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)