BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH09FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1804 1219 0.0
>3x_Contig1804
Length = 51183
Score = 1219 bits (615), Expect = 0.0
Identities = 736/766 (96%), Gaps = 8/766 (1%)
Strand = Plus / Minus
Query: 85 caagtaatcaagatggttttctttatcaaccacattcttgtatggtgtctttttgctgga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26275 caagtaatcaagatggttttctttatcaaccacattcttgtatggtgtctttttgctgga 26216
Query: 145 ttcttccgaggtatctacttcattcacatcttcagaatgagctttttccatcacgacttc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26215 ttcttccgaggtatctacttcattcacatcttcagaatgagctttttccatcacgacttc 26156
Query: 205 aagttcctttttctccaagctcaactttggtaagaaagttgagttaccaaccagctctgc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26155 aagttcctttttctccaagctcaactttggtaagaaagttgagttaccaaccagctctgc 26096
Query: 265 ctcttctatagactttccaacgtagatattgtcgaatgatatatcgcttgcacttgacca 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26095 ctcttctatagactttccaacgtagatattgtcgaatgatatatcgcttgcacttgacca 26036
Query: 325 aatatcaaaggaaattgcagtaatagcatcaatgttcgctggtgttttatcctcataata 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26035 aatatcaaaggaaattgcagtaatagcatcaatgttcgctggtgttttatcctcataata 25976
Query: 385 attgggattcgctatgagaggcgccttccattcaccttgataattggggttagggatcat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25975 attgggattcgctatgagaggcgccttccattcaccttgataattggggttagggatcat 25916
Query: 445 ttcagccttccaagtacctctgtatttttcattttcaaccatctttggtctccactttcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25915 ttcagccttccaagtacctctgtatttttcattttcaaccatctttggtctccactttcc 25856
Query: 505 acaaccttgtttcgtatagcacgaaagattaaacaat-angggagcaatccatctttcat 563
||||||||||||||||||||||||| |||| |||||| | |||||||||||||||| |||
Sbjct: 25855 acaaccttgtttcgtatagcacgaaggatt-aacaataaggggagcaatccatcttccat 25797
Query: 564 tcaccttgtcattccaccaatctggtttagaacgcgattcatcctcgatgtattcagaga 623
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25796 ccaccttgtcattccaccaatctggtttagaacgcgattcatcctcgatgtattcagaga 25737
Query: 624 tgctgtcatcccattcctctgtttttttg-acatggaatctggaatcaccttgggttcat 682
||||||||||||||||||||| ||||||| |||| | |||||||||| |||||||||||
Sbjct: 25736 tgctgtcatcccattcctctggttttttgaacattggatctggaatccacttgggttcat 25677
Query: 683 tttcatcccagtctttcggttttattgcagtgggatcagggatcatagaccttcttgccc 742
||||||||||||||| ||||||||| |||||||||||||||||||||||||| | |||||
Sbjct: 25676 tttcatcccagtcttccggttttatggcagtgggatcagggatcatagacctgc-tgccc 25618
Query: 743 cattcgtttggctgactagcagaaaggatctccattttcccttggaaggatttaggctgg 802
|| || |||||||||||||| |||||||| || |||||||||| ||||||||||||||
Sbjct: 25617 caatccgctggctgactagcag-aaggatcttcaatttcccttgg-aggatttaggctgg 25560
Query: 803 gtctgaaatgttcctccccaaagcaagttt-ctgccttgacaactt 847
||||| |||||||| || |||||||||| |||||||||||||||
Sbjct: 25559 gtctg-aatgttccctccgcaagcaagtttcctgccttgacaactt 25515
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7382
Number of Sequences: 1807
Number of extensions: 7382
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)