BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH10FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1800 1217 0.0
>3x_Contig1800
Length = 38778
Score = 1217 bits (614), Expect = 0.0
Identities = 682/697 (97%), Gaps = 6/697 (0%)
Strand = Plus / Plus
Query: 87 catagaagtgttcaagtttattttgttagcaaagatcgtgtacttctgaacagtctcaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5814 catagaagtgttcaagtttattttgttagcaaagatcgtgtacttctgaacagtctcaaa 5873
Query: 147 cccatagtaaaatacaactggggatatacgagagttaaccgtgactacagctagagaacc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5874 cccatagtaaaatacaactggggatatacgagagttaaccgtgactacagctagagaacc 5933
Query: 207 attagaacctttttcgacactcactccatggatgttttgcttcattaaatcaatattgta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5934 attagaacctttttcgacactcactccatggatgttttgcttcattaaatcaatattgta 5993
Query: 267 cttcttccagttcttaaagtccctaggttcatcattattcgttggaggtctccagaaagt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5994 cttcttccagttcttaaagtccctaggttcatcattattcgttggaggtctccagaaagt 6053
Query: 327 gattgaagaaccctcaaacttgctggaaatttccttacccttgacctttaggctttcaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6054 gattgaagaaccctcaaacttgctggaaatttccttacccttgacctttaggctttcaat 6113
Query: 387 ttta-cccaacaatttgtccaagataaaatgcaatccactggattcaactgagacataac 445
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6114 tttaccccaacaatttgtccaagataaaatgcaatccactggattcaactgagacataac 6173
Query: 446 gtttaccgtcgttgatcttcgcagctttttctgctgtctctgtaacaaaatcgggtacct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6174 gtttaccgtcgttgatcttcgcagctttttctgctgtctctgtaacaaaatcgggtacct 6233
Query: 506 tcaatggaagttcagcttggccccaggcaatttcatgacctgcctttagaacaccagcat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6234 tcaatggaagttcagcttggccccaggcaatttcatgacctgcctttagaacaccagcat 6293
Query: 566 catctttc-acacggcaancacataagttgtatcagaaagaatagtaacagattcttctg 624
|||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 6294 catctttcaacacggcaacaacataagttgtatcagaaggaatagtaacagattcttctg 6353
Query: 625 gcttt-aagatggaacgtcgattgtctttcccgtgtccttgtcgat-aacaataagtggt 682
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6354 gctttaaagatggaacgtcgattgtctttcccgtgtccttgtcgataaacaataagtggt 6413
Query: 683 ctgtcgtaatgaagtcgtgcttatttgtgattgttacagatccctgcggcattttaatat 742
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 6414 ctgtcgtaatgaagtcgtgcttatttgtgattgttacagatccgtgcgcaattttaata- 6472
Query: 743 tgaacgggttaaattacctttcttatactttacaagg 779
|||||||||| ||| ||| |||||||||| |||||||
Sbjct: 6473 tgaacgggttcaataacc-ttcttatactctacaagg 6508
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5943
Number of Sequences: 1807
Number of extensions: 5943
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)