BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH10RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1057 1505 0.0
>3x_Contig1057
Length = 3069
Score = 1505 bits (759), Expect = 0.0
Identities = 830/852 (97%), Gaps = 2/852 (0%)
Strand = Plus / Plus
Query: 49 taccttgaatttgcgtattgtgaaataaaaatgtatttagagagtcattgggatgggtaa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1526 taccttgaatttgcgtattgtgaaataaaaatgtatttagagagtcattgggatgggtaa 1585
Query: 109 actgggacgttctgcgtttttatactggagcgtattccaaatcgttactgttttcatatt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1586 actgggacgttctgcgtttttatactggagcgtattccaaatcgttactgttttcatatt 1645
Query: 169 cgtacatgtccaaagcgacaatggcagattctctcacgacagaatcggaatccttcaagt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1646 cgtacatgtccaaagcgacaatggcagattctctcacgacagaatcggaatccttcaagt 1705
Query: 229 gctccttcaatacgggcaagacatcatccgtagcgatggatcctagtgcctcggcagctt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1706 gctccttcaatacgggcaagacatcatccgtagcgatggatcctagtgcctcggcagctt 1765
Query: 289 cgtgtctgaccattggggcttcttccggacgtgccaaaacttccttgagatgaggtacca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1766 cgtgtctgaccattggggcttcttccggacgtgccaaaacttccttgagatgaggtacca 1825
Query: 349 ccactgggttacagatttgaccaaacacatatgcgatttcgtgcttgaaaagagcagatg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826 ccactgggttacagatttgaccaaacacatatgcgatttcgtgcttgaaaagagcagatg 1885
Query: 409 ggtcatcgaacccagatgccaatgctaaacatgcctcgtcgttaccgatgtctctcaaac 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1886 ggtcatcgaacccagatgccaatgctaaacatgcctcgtcgttaccgatgtctctcaaac 1945
Query: 469 ggaacatggctctgtaacgctcgaacaacgggcggttttgatcgttcaaaatatctttca 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 ggaacatggctctgtaacgctcgaacaacgggcggttttgatcgttcaaaatatctttca 2005
Query: 529 actcttggatcttgtagtctttctccagggaaaatggtggcgctgggtcgatagaagagt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 actcttggatcttgtagtctttctccagggaaaatggtggcgctgggtcgatagaagagt 2065
Query: 589 acaaagattcttgtaaagcctctcttctgccttcttcactggtttcccacttgattctat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2066 acaaagattcttgtaaagcctctcttctgccttcttcactggtttcccacttgattctat 2125
Query: 649 caatggcaagctcacacgtttgtctgatctcc-acagtgggtcttctttgaaatattttt 707
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2126 caatggcaagctcacacgtttgtctgatctccaacagtgggtcttctttgaaatattttt 2185
Query: 708 ctaggatatccaacgagtcaacatcgttcaaagcacccaatgcctcngctgcctcgtgtc 767
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2186 ctaggatatccaacgagtcaacatcgttcaaagcacccaatgcctcggctgcctcgtgtc 2245
Query: 768 tttacatacactgntgtttgtcattaggcagcacattccttgacaatggagcaccggcca 827
|| ||||||||| |||||||||| || ||||||| ||| |||||||||||||||||
Sbjct: 2246 ttaccatacactgttgtttgtcatcagcaagcacatccctgagcaatggagcaccggcca 2305
Query: 828 tgttnttcgttttgactaacacgtatgcgaactcattgctttaacatttaactttcgtcc 887
|||| ||||||| ||||||||||||||| |||| ||||| |||| || ||||||||||
Sbjct: 2306 tgtttttcgtttgacctaacacgtatgcgacctca-tgcttcaacaattcactttcgtcc 2364
Query: 888 ccggacgcttct 899
||| ||||||||
Sbjct: 2365 ccgaacgcttct 2376
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5238
Number of Sequences: 1807
Number of extensions: 5238
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)