BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH11FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1294 1334 0.0
>3x_Contig1294
Length = 6938
Score = 1334 bits (673), Expect = 0.0
Identities = 731/745 (98%), Gaps = 4/745 (0%)
Strand = Plus / Plus
Query: 86 tataagcaggggatcatattgagaacgtccgagtcatacatgatggttgttccttttttg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4333 tataagcaggggatcatattgagaacgtccgagtcatacatgatggttgttccttttttg 4392
Query: 146 tccctttactcaagatctttgatcactcgaaata-tcgggcagggccctttattcgcaag 204
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4393 tccctttactcaagatctttgatcactcgaaataatcgggcagggccctttattcgcaag 4452
Query: 205 aacaacttttagattattacaacaagaatagaaaaccggtactgtcgaatgtcattttta 264
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 4453 aacaacttttagattattacaacaagaatagaaaaccggtactgtcgaatgtcaattaga 4512
Query: 265 taacgtctatatatttgcattcatatctgtaatcttataaccacttctggtattcatatc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4513 taacgtctatatatttgcattcatatctgtaatcttataaccacttctggtattcatatc 4572
Query: 325 aacgtcctcttctacgggatatctcttttcatctaactgtgcttatgttcaccttttcta 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4573 aacgtcctcttctacgggatatctcttttcatctaactgtgcttatgttcaccttttcta 4632
Query: 385 ttataatggaaaatgatatctaagaacatattaagtgcgaatctccagttagaaagatcg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4633 ttataatggaaaatgatatctaagaacatattaagtgcgaatctccagttagaaagatcg 4692
Query: 445 attaagacggaggataagacaaccaaatagggaattagaggtgaacggatgctatatttc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4693 attaagacggaggataagacaaccaaatagggaattagaggtgaacggatgctatatttc 4752
Query: 505 ggatgcaaggagtgatggatgataaaaatgtggcaaaacacataaaattttgtcaaagac 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4753 ggatgcaaggagtgatggatgataaaaatgtggcaaaacacataaaattttgtcaaagac 4812
Query: 565 atttgcaattgttgccgtctcatcgcctggatatagatcccaataggttagccattgcgt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4813 atttgcaattgttgccgtctcatcgcctggatatagatcccaataggttagccattgcgt 4872
Query: 625 tctattcgttgacagcgattgagctattgggcaagccagtgcgcaaggacttccaataca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4873 tctattcgttgacagcgattgagctattgggcaagccagtgcgcaaggacttccaataca 4932
Query: 685 gttttggattggattagatcgtgctttattgaacttgctgattactctggctttgccatc 744
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4933 g-tttggattggattagatcgtgctatattgaacttgctgattactctggctttgccatc 4991
Query: 745 ccgttttttaaacacgctaagcaattg-cttctataaattt-ccaaatccattattggga 802
|||| ||||| |||||||||||||||| || |||||||||| |||||| ||||||| |||
Sbjct: 4992 ccgtcttttagacacgctaagcaattgactactataaatttaccaaatacattatttgga 5051
Query: 803 ctaatatgccttatgttgttggggg 827
|||||||| ||||||||||||||||
Sbjct: 5052 ctaatatgtcttatgttgttggggg 5076
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6841
Number of Sequences: 1807
Number of extensions: 6841
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)