BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH11RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig537 1572 0.0
>3x_Contig537
Length = 3151
Score = 1572 bits (793), Expect = 0.0
Identities = 832/841 (98%), Gaps = 3/841 (0%)
Strand = Plus / Plus
Query: 49 caccgtggtaagttccttcccgagggaagtcgaaataagtgctgaaaaaacgataattgg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1676 caccgtggtaagttccttcccgagggaagtcgaaataagtgctgaaaaaacgataattgg 1735
Query: 109 gatgtaagcgaatgtaaacatggtgtaaagtttgaacaaaaggagcgttgaggttcagat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1736 gatgtaagcgaatgtaaacatggtgtaaagtttgaacaaaaggagcgttgaggttcagat 1795
Query: 169 tttactagctacgcctgttgtgttttttcggaatgctcagtttgatggtttacacaacca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1796 tttactagctacgcctgttgtgttttttcggaatgctcagtttgatggtttacacaacca 1855
Query: 229 acaatttaagatgtgtaaaggtccttaattcagatgtgtcaagttagttccgaattctac 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1856 acaatttaagatgtgtaaaggtccttaattcagatgtgtcaagttagttccgaattctac 1915
Query: 289 cagcaatttatacgaattccatcttgatttctgataggcaatgacatatagttaagttgt 348
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1916 cagcaatttatacgaattccatcttgatttctgataggcaatgacatatatttaagttgt 1975
Query: 349 gtcatagtttcaagttcaaacctaaaatacgcattgaacacgttacccatgtgttgggga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976 gtcatagtttcaagttcaaacctaaaatacgcattgaacacgttacccatgtgttgggga 2035
Query: 409 ttaacgaattgcatgcaagattactatacaagtattcaaactcctgagaaccagtgcatg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2036 ttaacgaattgcatgcaagattactatacaagtattcaaactcctgagaaccagtgcatg 2095
Query: 469 aaaaacctcattaacagacagacgtgatgtattttttagccaatataagatttcaatgtc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2096 aaaaacctcattaacagacagacgtgatgtattttttagccaatataagatttcaatgtc 2155
Query: 529 gtttcataaaacaaggttagaccctattctaccttctatagatcttcgctggctatcgaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2156 gtttcataaaacaaggttagaccctattctaccttctatagatcttcgctggctatcgaa 2215
Query: 589 ccaaacatcaatcaaccagacatatttcgtttcgaagaatgtagcaatgcgaagaatacc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2216 ccaaacatcaatcaaccagacatatttcgtttcgaagaatgtagcaatgcgaagaatacc 2275
Query: 649 tggcccacaatattgccgtagtccctctattaaacttaattaacaagacgtccctacctt 708
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2276 tggcccacaatattgccgtagtccctctattaaacttaattaacaagacgtccctacc-t 2334
Query: 709 tttgaatgatggactctcatttagagatattatgtttgtcctatagcgcagtttcccttt 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2335 tttgaatgatggactctcatttagagatattatgtttgtcctatagcgcagtttcccttt 2394
Query: 769 acggctttatatgtagatgaagttttaattttaatagacctttcattgactaaataggaa 828
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2395 acggcttataatgtagatgaagttttaattttaatagacctttcattgactaaataggaa 2454
Query: 829 agacgttcagtattcgaaa-tcagttcaaaaacgcccgatatgggatcaatgggaacatt 887
|||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2455 agacgtcaagta-tcgaaattcagttcaaaaacgcccgatatgggatcaatgggaacatt 2513
Query: 888 t 888
|
Sbjct: 2514 t 2514
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5632
Number of Sequences: 1807
Number of extensions: 5632
Number of successful extensions: 22
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)