BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH12FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 1457 0.0
>3x_Contig1686
Length = 15382
Score = 1457 bits (735), Expect = 0.0
Identities = 837/862 (97%), Gaps = 7/862 (0%)
Strand = Plus / Plus
Query: 86 agtccagaaatgaaggaatctgatacgcattttgctgctaccgcttaggtgaattcaagt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 agtccagaaatgaaggaatctgatacgcattttgctgctaccgcttaggtgaattcaagt 2418
Query: 146 gaacctgcatttgaacagtatagaaatatgtcagattcacccaatgaaattcttcaatat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 gaacctgcatttgaacagtatagaaatatgtcagattcacccaatgaaattcttcaatat 2478
Query: 206 agggatagtcctgatttcgaagattgctgcgatgctatatctcaagatttatttgaattg 265
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2479 agggatagtcctgagttcgaagattgctgcgatgctatatctcaagatttatttgaattg 2538
Query: 266 aacgggagcctttcaactatgaaccactttgtaacggctttggaaacgaatgtatcccac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2539 aacgggagcctttcaactatgaaccactttgtaacggctttggaaacgaatgtatcccac 2598
Query: 326 ggtaaatctaacactaaagttatcgacaatatcaataagaagacggttgaactaatagac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2599 ggtaaatctaacactaaagttatcgacaatatcaataagaagacggttgaactaatagac 2658
Query: 386 aaaagtacaaaattagtatcatcgataaacgagaatattcataaagttaatgagttagag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2659 aaaagtacaaaattagtatcatcgataaacgagaatattcataaagttaatgagttagag 2718
Query: 446 gagtcggctttggataagcctcatttgatcacaagggagaagttgactagggatgcgaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2719 gagtcggctttggataagcctcatttgatcacaagggagaagttgactagggatgcgaaa 2778
Query: 506 ttctctgtacaggaattcaagaaatatcaacaacattttcttgaagttacaaagcggata 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2779 ttctctgtacaggaattcaagaaatatcaacaacattttcttgaagttacaaagcggata 2838
Query: 566 aatgacatggccaaagtggctttggaagatgaagaacaaaataattccttgatggatact 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2839 aatgacatggccaaagtggctttggaagatgaagaacaaaataattccttgatggatact 2898
Query: 626 gttttaagagaggaagaagatgaacacgcaaaaagaacacaggtggttatagagcgagaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2899 gttttaagagaggaagaagatgaacacgcaaaaagaacacaggtggttatagagcgagaa 2958
Query: 686 accataaataatgaggaatttgcatacccagc-acatctgatcagggaacgagaccaaga 744
| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 2959 ccaataaataatgaggaatttgcata-ccagcaacatctgatcagggaacgagaccaaga 3017
Query: 745 gatattcaacatagaacaaggtattacgggaattaaatggcatattccaggacttaggtg 804
||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct: 3018 gatatcaaacatagaacaaggtataac-ggaattaaatggcatattcaaggacttaggtg 3076
Query: 805 gtttattgc-acagcangggcagctagtagatagcattgaagctaatttgtacattgttg 863
||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 3077 gtttagtgcaacagcaagggcagctagtagatagcattgaagctaatttgtacaatgtag 3136
Query: 864 gagaataattccag-aatgcagcaaatgagttatctcgcgctttgagatcgggacccagt 922
|| ||||| |||| ||||||||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 3137 aag-ataataccagaaatgcagcaaatgagttatctcgcgctatgagatccggacgcagt 3195
Query: 923 tc-agttagcttaaactacatt 943
|| ||| |||| ||||||||||
Sbjct: 3196 tcaagtaagctaaaactacatt 3217
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7177
Number of Sequences: 1807
Number of extensions: 7177
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)