BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZH12RM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1120 1346 0.0
>3x_Contig1120
Length = 3902
Score = 1346 bits (679), Expect = 0.0
Identities = 754/770 (97%), Gaps = 7/770 (0%)
Strand = Plus / Plus
Query: 48 cacgacccactggtgttagaccccaccagtgagcacgttgttcagtaggaacgaaggagg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cacgacccactggtgttagaccccaccagtgagcacgttgttcagtaggaacgaaggagg 574
Query: 108 atagcagagtatcagtgtaacctggtgatacagagttacatctgatcttaccagctggag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 atagcagagtatcagtgtaacctggtgatacagagttacatctgatcttaccagctggag 634
Query: 168 aggtcaaaccagagaattcgacggcgaaacccttggccatgtgtcttactgcatctttag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 635 aggtcaaaccagagaattcgacggcgaaacccttggccatgtgtcttactgcagctttag 694
Query: 228 aagcgttgtaacaggtttggtagtttggaacgttactgatgtaactagacatagaagcag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aagcgttgtaacaggtttggtagtttggaacgttactgatgtaactagacatagaagcag 754
Query: 288 tcaagatcaaattaccgtggccttggttcttgaatacttcagcagcgtacctgctacagt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tcaagatcaaattaccgtggccttggttcttgaatacttcagcagcgtacctgctacagt 814
Query: 348 ggtaagtaccttggacgttaacgtccatgactctgcgccacatttctggggtggaaccat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ggtaagtaccttggacgttaacgtccatgactctgcgccacatttctggggtggaaccat 874
Query: 408 cgttcaagatagaaccgttagtccaggcaatacctgcgttagcaatgaatgtgttaattg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 cgttcaagatagaaccgttagtccaggcaatacctgcgttagcaatgaatgtgttaattg 934
Query: 468 cacgacctgngaaatcttccaagattctttcaaagacaaatttaacgtcgtcagcgttgg 527
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 cacgacctgggaaatcttccaagattctttcaaagacaaatttaacgtcgtcagcgttgg 994
Query: 528 taatatctacttggtatgacttggattcaatcccgtaagtcttgctcaaatggacggaaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 taatatctacttggtatgacttggattcaatcccgtaagtcttgctcaaatggacggaaa 1054
Query: 588 gttctggttggaaggttctgtccaaaataatgacatctgaaccacaagaagcgaaaccct 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 gttctggttggaaggttctgtccaaaataatgacatctgaaccacaagaagcgaaaccct 1114
Query: 648 cacatagagcgccaccaatggcaccagcaccaccagtaattacggtcattttgccctttt 707
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 1115 cacatagagcgccaccaatggcaccagcaccaccagtaataacggtcaatttgccctttt 1174
Query: 708 gacttgacaaattgaggtaaattgacaccttgtgggtactgttccgttgggaagagcttg 767
|||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct: 1175 gactgaacaaattgaggtaa-ttgacaccttgtgggtactgttccgttgg-aggagcttg 1232
Query: 768 gtgaaacgaccggtgttcttcatttgggagtcttgatgaaaactttggaa 817
|| |||||| ||||| ||||| |||| |||||||||| |||||||||||
Sbjct: 1233 -tggaacgac-ggtgt-cttcagttgg-agtcttgatg-aaactttggaa 1277
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5553
Number of Sequences: 1807
Number of extensions: 5553
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)