BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA01FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1527 1518 0.0
>3x_Contig1527
Length = 8131
Score = 1518 bits (766), Expect = 0.0
Identities = 804/814 (98%), Gaps = 2/814 (0%)
Strand = Plus / Minus
Query: 86 tgcttcctcatcatcacagatgagtggagcattcagctcttctgcagaaggatatggacc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6718 tgcttcctcatcatcacagatgagtggagcattcagctcttctgcagaaggatatggacc 6659
Query: 146 tgtacccatcacagacacttcggtatatgattgttagaagatggtaatagagcggtgtac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6658 tgtacccatcacagacacttcggtatatgattgttagaagatggtaatagagcggtgtac 6599
Query: 206 ctatagtatgtttatgataggccagtacgtttaggttgtgacccacgtcttaacaataac 265
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6598 ctatagtatgtctatgataggccagtacgtttaggttgtgacccacgtcttaacaataac 6539
Query: 266 attaactcttactcgaagcggttttttcagtttcataaacaccggaaaatctaaaaacat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6538 attaactcttactcgaagcggttttttcagtttcataaacaccggaaaatctaaaaacat 6479
Query: 326 atcaaaaattagttacatacacgtaggtgcgtacaagtggggacatatttataaaagata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478 atcaaaaattagttacatacacgtaggtgcgtacaagtggggacatatttataaaagata 6419
Query: 386 ccctagcgacattaaacaccaaaagagaaaaagtgaaggaaatgagctgaatatctacac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6418 ccctagcgacattaaacaccaaaagagaaaaagtgaaggaaatgagctgaatatctacac 6359
Query: 446 tgatgctagaacccttgaaaaagggtaaggaatcaggaagaaaaacaactctaagaaata 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6358 tgatgctagaacccttgaaaaagggtaaggaatcaggaagaaaaacaactctaagaaata 6299
Query: 506 ttagtagttaaagtgtgactcaagaagtgaaagcttaattaaaggcctctgtagaataga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6298 ttagtagttaaagtgtgactcaagaagtgaaagcttaattaaaggcctctgtagaataga 6239
Query: 566 gaaaagtattaggatcgaaaaaggacgatttggaacaatttctatgctaagagatgtgtt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6238 gaaaagtattaggatcgaaaaaggacgatttggaacaatttctatgctaagagatgtgtt 6179
Query: 626 tatccggaacacatttcacaagcttctgggttatcaatagcacaagcaataaccttggag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6178 tatccggaacacatttcacaagcttctgggttatcaatagcacaagcaataaccttggag 6119
Query: 686 ttgaaaatatcgaactcactagcgtcggttggggcttg-ttaacatcctcggcatccttt 744
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 6118 ttgaaaatatcgaactcactagcgtcggttggggcttgtttaacatcctcggcatccttt 6059
Query: 745 gctgactcggcaggagtaactggagtgactgtttgagtgtcatcaatttttagggatgct 804
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 6058 gctgactcggcaggagtaactggagtgactggttgagtgtcatcaatttttagggatgct 5999
Query: 805 acgctgtttacgatagattcttcactagatgaagctggagaaacttctttgtaagccttc 864
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
Sbjct: 5998 acgctgtttacgatagattcttcactagatggagctggagaaacttctttgaaagcctcc 5939
Query: 865 caagccggtgttacacctttggtcattgacactg 898
||||||||| ||| ||||||||||||||||||
Sbjct: 5938 acagccggtgtcaca-ctttggtcattgacactg 5906
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6114
Number of Sequences: 1807
Number of extensions: 6114
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)