BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA01RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig428 773 0.0
3x_Contig1196 464 e-130
>3x_Contig428
Length = 1780
Score = 773 bits (390), Expect = 0.0
Identities = 402/406 (99%)
Strand = Plus / Plus
Query: 49 ctattgattcaatattaccgacagccttaagctcgtttaagtctgcagctgcaattgaat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1374 ctattgattcaatattaccgacagccttaagctcgtttaagtctgcagctgcaattgaat 1433
Query: 109 catccatcgccgattatgaacttcccgatgttgttaattcttcggaaacagtaactatga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 catccatcgccgattatgaacttcccgatgttgttaattcttcggaaacagtaactatga 1493
Query: 169 attcgctttcctgatccgctgttttggtaatggaggaagaaatagtagtgctggatgaga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 attcgctttcctgatccgctgttttggtaatggaggaagaaatagtagtgctggatgaga 1553
Query: 229 agctcgatttagcttctgtatccttttcggcagatgaaatgtctgattcttcgagttctg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 agctcgatttagcttctgtatccttttcggcagatgaaatgtctgattcttcgagttctg 1613
Query: 289 ttttatcagtggctacagacagttcaatttctgtcacaacgactgtagatgtgacaagtt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1614 ttttatcagtggctacagacagttcaatttctgtcacaacgactgtagatgtgacaagtt 1673
Query: 349 ctacgtcaaggttagactttatttgatcgatatgcgtagcggtatcttcttccgcttgta 408
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 1674 ctacgtcaaggttagactttatttgatcgatatgcgtcgggttatcttcttccgcttgta 1733
Query: 409 atgaggtacctggataatgatcttctgattggacttcatgagcgac 454
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1734 atgaggtacctggataatgatcttctgattggacctcatgagcgac 1779
>3x_Contig1196
Length = 5660
Score = 464 bits (234), Expect = e-130
Identities = 273/281 (97%), Gaps = 4/281 (1%)
Strand = Plus / Plus
Query: 623 tgtattcgatgtctcttctatcaattcggataaagaggaaacgttgtcaatatcatcatc 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tgtattcgatgtctcttctatcaattcggataaagaggaaacgttgtcaatatcatcatc 73
Query: 683 agagaattcgctaaatgagatggatgcttcgacagaagatgtagcttctgttgtatcact 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 agagaattcgctaaatgagatggatgcttcgacagaagatgtagcttctgttgtatcact 133
Query: 743 caccattagtagttctgaagatgtttctgtctgctttt-atcatcttggtcaatagcatt 801
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 134 caccattagtagttctgaagatgtttctgtctgcttttcatcatcttgttcaatagcatt 193
Query: 802 agactcttcagaggntgtgataacccaatagtgtttcagaagtggcttctgtgtctaatt 861
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 194 agactcttcagaggttgtgataa-ccaatagtgtttcagaagtggcttctgtgtctaatt 252
Query: 862 ctttcgaagattgctctcgttga-agttcagctttattttc 901
||| ||||||||||||| ||||| |||||||||| ||||||
Sbjct: 253 cttccgaagattgctct-gttgacagttcagcttcattttc 292
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6332
Number of Sequences: 1807
Number of extensions: 6332
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 2
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)