BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA02FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1584 1441 0.0
>3x_Contig1584
Length = 9710
Score = 1441 bits (727), Expect = 0.0
Identities = 802/822 (97%), Gaps = 4/822 (0%)
Strand = Plus / Plus
Query: 87 aacaaggaaaaaggccagccaggattcattctacgtgtgttcgcattcccagcgttgtta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3985 aacaaggaaaaaggccagccaggattcattctacgtgtgttcgcattcccagcgttgtta 4044
Query: 147 gacaagacgttccttgcactcttgatgaccggtgatctcggggcgatgagaatcatgaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4045 gacaagacgttccttgcactcttgatgaccggtgatctcggggcgatgagaatcatgaga 4104
Query: 207 agctactatcatttgttaagaggattcgcaagtgaaatgaaagatgaggtctggttccta 266
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4105 agctactatcagttgttaagaggattcgcaagtgaaatgaaagatgaggtctggttccta 4164
Query: 267 gaaggcatgactcaggtactaccacaggatgtcgatgaatacagtggtggtggtggtatg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4165 gaaggcatgactcaggtactaccacaggatgtcgatgaatacagtggtggtggtggtatg 4224
Query: 327 cacatgatgttggatttcttaggcggagggttaccctccatgactacaaccaacttgacg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4225 cacatgatgttggatttcttaggcggagggttaccctccatgactacaaccaacttgacg 4284
Query: 387 gattttggaattttctagatcaactattcgtaccttaaaaatggactttcagtatggaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285 gattttggaattttctagatcaactattcgtaccttaaaaatggactttcagtatggaaa 4344
Query: 447 aatcaaaaaaatcgaagagacgttaccactgcacaaaactagcatgagaaacctttaatt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4345 aatcaaaaaaatcgaagagacgttaccactgcacaaaactagcatgagaaacctttaatt 4404
Query: 507 cttgttcacaatatgaaattttcaacttttgcacttttacaaattgtaaatatgtatata 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4405 cttgttcacaatatgaaattttcaacttttgcacttttacaaattgtaaatatgtatata 4464
Query: 567 tatgcacatacatacccacacacagataggagtaaatatctttcacttgttttatgcatt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4465 tatgcacatacatacccacacacagataggagtaaatatctttcacttgttttatgcatt 4524
Query: 627 ttaatggcatatttattataaagtgttttcaagaattagtcgtaaagtgacatttggagc 686
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 4525 ttaatggcatatttattataaagtgttttcaagaattagtcgtaaagtgacattggaagc 4584
Query: 687 gagagatggtcgttcataatcctaacaattggcatttgggtcgataagaactgtattgac 746
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4585 gagagatggtcgttcataatcctaacaattggca-ttgggtcgataagaactgtattgac 4643
Query: 747 tgggcaaaggaatacttccaagaaaaattggtttgttttgactaccggagaatcaacaga 806
||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 4644 tgggcaaagaaatacttccaagaaaaattgg-ttggtttgactaccggagaatcaacaga 4702
Query: 807 tgaactggttgccagaattac-aagctatcatcattagaaggtgattgcgaggtgaaccc 865
||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4703 tgaactgtatgcagaaattacaaagctatcatcattagaaggtgattgcgaggtgaacca 4762
Query: 866 acggnagggtaaagggaattcttta-ttgatttggaattgaa 906
|||| ||||||| | || ||||||| |||||||| |||||||
Sbjct: 4763 acggaagggtaaggtgatttctttatttgatttgaaattgaa 4804
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7249
Number of Sequences: 1807
Number of extensions: 7249
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)