BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA02RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1614 0.0
>3x_Contig1654
Length = 17174
Score = 1614 bits (814), Expect = 0.0
Identities = 853/861 (99%), Gaps = 4/861 (0%)
Strand = Plus / Minus
Query: 47 ctagtgccgggcaagaacaagaagattcagacagtggatcgtcatatcgggtgcgtatat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9366 ctagtgccgggcaagaacaagaagattcagacagtggatcgtcatatcgggtgcgtatat 9307
Query: 107 tccgggttgatgcctgatggtagacatttggtgaacagaggtcgtgaagaagctgccagc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9306 tccgggttgatgcctgatggtagacatttggtgaacagaggtcgtgaagaagctgccagc 9247
Query: 167 ttcaagaaaatgtacagcacaccaattccaatccctgcatttgctgaccgtgtcggccaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9246 ttcaagaaaatgtacagcacaccaattccaatccctgcatttgctgaccgtgtcggccaa 9187
Query: 227 tatgttcaagcacatacactatataatagtgtcagacctttcggcgtcaccgccatcttc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9186 tatgttcaagcacatacactatataatagtgtcagacctttcggcgtcaccgccatcttc 9127
Query: 287 ggtggtgttgattctgatggggctcatttatacatgctcgaaccaagcggtacttactgg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9126 ggtggtgttgattctgatggggctcatttatacatgctcgaaccaagcggtacttactgg 9067
Query: 347 ggctacaagagtgcagctacaggtaagggtagacagtcagcaaaggctgaactggaaaag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9066 ggctacaagagtgcagctacaggtaagggtagacagtcagcaaaggctgaactggaaaag 9007
Query: 407 ctttcgaacaagaacccaaacctaaccgctagagaagctgttaaagaagcagcaaggata 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9006 ctttcgaacaagaacccaaacctaaccgctagagaagctgttaaagaagcagcaaggata 8947
Query: 467 atttatgcagcccatgaagacaacaaagaaaaagagttcgagttggaactaagttggtgt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8946 atttatgcagcccatgaagacaacaaagaaaaagagttcgagttggaactaagttggtgt 8887
Query: 527 tccctgtcagagacaaacggccttcataaagaagtaccaaaggacctatttgatgaagcg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8886 tccctgtcagagacaaacggccttcataaagaagtaccaaaggacctatttgatgaagcg 8827
Query: 587 gttgattacgctaagaaggaattgggtgatgacagtgacagtgacagcgacgattctgac 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8826 gttgattacgctaagaaggaattgggtgatgacagtgacagtgacagcgacgattctgac 8767
Query: 647 ggagatgatactaaagagaagaaggatgaagagggtgacatagaaatttcttaaaaatct 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8766 ggagatgatactaaagagaagaaggatgaagagggtgacatagaaatttcttaaaaatct 8707
Query: 707 cagtttaacaacattgtctttgaaagagcaagctttaatgacccgcttctgtcaactgta 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8706 cagtttaacaacattgtctttgaaagagcaagctttaatgacccgcttctgtcaactgta 8647
Query: 767 tagtacaaccacacaaaaccagaatatanttatatatatatatatatcctattaattcct 826
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 8646 tagtacaaccacacaaaaccagaatatatttatatatatatatatatctaattaattcct 8587
Query: 827 tcattggatt-caagttgttctcgc-acctttga-tctctagatgc-acatattgatgcg 882
|||||||||| |||||||||||||| |||||||| ||||||| ||| |||||||||||||
Sbjct: 8586 tcattggattccaagttgttctcgcaacctttgattctctagttgcaacatattgatgcg 8527
Query: 883 gttcgttgctgcttcagactc 903
|||||||||||||||||||||
Sbjct: 8526 gttcgttgctgcttcagactc 8506
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,638
Number of Sequences: 1807
Number of extensions: 10638
Number of successful extensions: 1388
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)