BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA03FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1280 1322 0.0
>3x_Contig1280
Length = 5058
Score = 1322 bits (667), Expect = 0.0
Identities = 727/743 (97%), Gaps = 3/743 (0%)
Strand = Plus / Minus
Query: 88 ccaccgcttcacttaaaaatttcgatggatgtagtgtcacaatacgtttcaatgtgctac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1722 ccaccgcttcacttaaaaatttcgatggatgtagtgtcacaatacgtttcaatgtgctac 1663
Query: 148 ccatcaactcaataatcgagtaaaatctcaattcagtgatgacttcctgaggtaatctgc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1662 ccatcaactcaataatcgagtaaaatctcaattcagtgatgacttcctgaggtaatctgc 1603
Query: 208 cgtaaaaggcatatccttctttcaaatcaggaatagattcattagcagatttaggtgttg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1602 cgtaaaaggcatatccttctttcaaatcaggaatagattcattagcagatttaggtgttg 1543
Query: 268 gcgaatccttgacagcattcttctcttcctcttcttcagttttatcactagaaccctcat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1542 gcgaatccttgacagcattcttctcttcctcttcttcagttttatcactagaaccctcat 1483
Query: 328 cctctgtgtaagtttcatcaccggaatcctcattctcaggatccataactggttcttcct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1482 cctctgtgtaagtttcatcaccggaatcctcattctcaggatccataactggttcttcct 1423
Query: 388 ccacaatgaacctcactagtgactcatcattaatccgtaggctgctcattagctcacatc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1422 ccacaatgaacctcactagtgactcatcattaatccgtaggctgctcattagctcacatc 1363
Query: 448 cagcaaagaaacactcttttgggttaccgaacaatgctacttcattaaaacatttcatga 507
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1362 cagaaaagaaacactcttttgggttaccgaacaatgctacttcattaaaacatttcatga 1303
Query: 508 tcacagtcaaaaacttcttggaacgatcagcaccaaggtgattattattgccccaatgaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1302 tcacagtcaaaaacttcttggaacgatcagcaccaaggtgattattattgccccaatgaa 1243
Query: 568 tgaatttgatcaaaattttgggcaaatcccacccaatttcatacactacatctttattct 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1242 tgaatttgatcaaaattttgggcaaatcccacccaatttcatacactacatctttattct 1183
Query: 628 gttgtaaaagggataggacttcactcaaatattcatacttttgttctaaacttcccttga 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1182 gttgtaaaagggataggacttcactcaaatattcatacttttgttctaaacttcccttga 1123
Query: 688 agttcacttcttcag-atataagtccaagatagtaacaaggggtgattatatcactcttc 746
||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct: 1122 agttcacttcttcagaataaaggtccaagatagtaacaa-gggtgattatatcactcttc 1064
Query: 747 ttcttcacaaaagctgtgagtaactttttcctcaatctcttttgaacgttcaacttctta 806
| | ||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct: 1063 tcttccacaaaagctgtgagtaac-ttttcctcaatctctttgaaacgttcaacttctaa 1005
Query: 807 aagcattttggacttacaacgaa 829
| |||| ||| ||| ||||||||
Sbjct: 1004 aggcatcttgaactcacaacgaa 982
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8225
Number of Sequences: 1807
Number of extensions: 8225
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)