BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA03RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig758 1669 0.0
>3x_Contig758
Length = 3384
Score = 1669 bits (842), Expect = 0.0
Identities = 860/865 (99%), Gaps = 1/865 (0%)
Strand = Plus / Plus
Query: 47 tcgccaaactggtatcatagcatggccagaaaggttcataaactgtgacttgttgaaaag 106
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 31 tcgccaaactggtatcatagcatggccagaaaggttcataaactgtgacttgtt-aaaag 89
Query: 107 catcaagagatttaatctaggttcatggcaatattgaatatgaggtgagacgtttgatgt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 catcaagagatttaatctaggttcatggcaatattgaatatgaggtgagacgtttgatgt 149
Query: 167 cttcaacacggcatccgggcaaaattcattcttaagcattcttaacataatgactccggc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 cttcaacacggcatccgggcaaaattcattcttaagcattcttaacataatgactccggc 209
Query: 227 attatgtcttgtacttcgatataacggttctgggtttcctaaagcgctaagacataatag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 attatgtcttgtacttcgatataacggttctgggtttcctaaagcgctaagacataatag 269
Query: 287 cttctgagcgctcatgacagtttgaacgagcctaggcggaacgtacaaccagggctcgat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cttctgagcgctcatgacagtttgaacgagcctaggcggaacgtacaaccagggctcgat 329
Query: 347 ataattggaattgttacatttgttagcatgtatggatgattgattttcttaaatttgatg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ataattggaattgttacatttgttagcatgtatggatgattgattttcttaaatttgatg 389
Query: 407 attagagtaaagttaacaatttagataatcgaacaaaaaaggaacctcgctaacagctat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 attagagtaaagttaacaatttagataatcgaacaaaaaaggaacctcgctaacagctat 449
Query: 467 taccaaaaataaatggaaactgaacggtaggttatcacaggattctcgtatattcgacag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 taccaaaaataaatggaaactgaacggtaggttatcacaggattctcgtatattcgacag 509
Query: 527 aagctacacaagagatactattaatatacaactatctagcctcttttgagcaaaatgtct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aagctacacaagagatactattaatatacaactatctagcctcttttgagcaaaatgtct 569
Query: 587 tctaacaacaggaaaaagcttttgcttatgggccgttctggctccggtaagtcatcaatg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tctaacaacaggaaaaagcttttgcttatgggccgttctggctccggtaagtcatcaatg 629
Query: 647 aggtcaattatcttcagtaactacagtgcatttgatacaaggcgtttaggggcaactatt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aggtcaattatcttcagtaactacagtgcatttgatacaaggcgtttaggggcaactatt 689
Query: 707 gatgtggagcattcccatttgagattctttaggaacatgactttgaacctttgggattgt 766
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 690 gatgtggagcattcccatttgagattcttagggaacatgactttgaacctttgggattgt 749
Query: 767 ggtggtcaagatgtattcatggaaaattacttcacgcaacagaaagaccacatcttccaa 826
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 750 ggtggtcaagatgtattcatggaaaattacttcacgcaacagaaggaccacatcttccaa 809
Query: 827 atggttcaagtattaattcacgttttcgatgtagaatcaaaggatgtgttgaaagatgtt 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 atggttcaagtattaattcacgttttcgatgtagaatcaaaggatgtgttgaaagatgtt 869
Query: 887 gacatctttaccanagctttgaaac 911
||||||||||||| |||||||||||
Sbjct: 870 gacatctttaccagagctttgaaac 894
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6497
Number of Sequences: 1807
Number of extensions: 6497
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)