BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA04FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1335 1540 0.0
>3x_Contig1335
Length = 8696
Score = 1540 bits (777), Expect = 0.0
Identities = 816/824 (99%), Gaps = 4/824 (0%)
Strand = Plus / Minus
Query: 83 tgtggaaaacatcagaaagagcatatgtttttgctatgagtcttgttccgaaagaagggt 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 tgtggaaaacatcagaaagagcatatgtttttgctatgagtcttgttccgaaagaagggt 1239
Query: 143 atatttcaatatcgatatcgaaagtatctagggaatctatctggaatacaatgtcttttt 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 atatttcaatatcgatatcgaaagtatctagggaatctatctggaatacaatgtcttttt 1179
Query: 203 cgtcctcttcttgaataggcaaaataatatttcttggaatgatattcgatacactagaag 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1178 cgtcctcttcttgaataggcaaaataatatttcttggaatgatattcgatacactagaag 1119
Query: 263 taagagtgatgcgtccaggtgaggataacatcatttcgtcgtccttgttgagcgtgattg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1118 taagagtgatgcgtccaggtgaggataacatcatttcgtcgtccttgttgagcgtgattg 1059
Query: 323 attcctttcctggcttgaaagagagttttacaaaaatctttctttccaaaaaattgtgac 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 attcctttcctggcttgaaagagagttttacaaaaatctttctttccaaaaaattgtgac 999
Query: 383 catactttcttagagggataattggtggtggtaaggtgaaatctggaatatcctttaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 catactttcttagagggataattggtggtggtaaggtgaaatctggaatatcctttaatg 939
Query: 443 aatcattcagggacagttgatcgtcagaaaaaagttccccgggatctgatggtctcaaac 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 aatcattcagggacagttgatcgtcagaaaaaagttccccgggatctgatggtctcaaac 879
Query: 503 ttccagcgagtggtctatctgggaaggcgctataacgtttgcggtttccagcatagctta 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ttccagcgagtggtctatctgggaaggcgctataacgtttgcggtttccagcatagctta 819
Query: 563 aaagtacattcaatacagaaagatgtccttcccataatgcatagaaaacttgcgagag-g 621
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 818 aaagtacattcaatacagaaagatgtccttcccataatgcatagaaaacttgcgagagtg 759
Query: 622 ttttgttgatctttcatgaacacgtctgcacctagttctaataatacttggacggtggtg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ttttgttgatctttcatgaacacgtctgcacctagttctaataatacttggacggtggtg 699
Query: 682 gcgtgtccttcttgaattgcgtagaaaattggtggccatttgttgaacccatcaatctca 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gcgtgtccttcttgaattgcgtagaaaattggtggccatttgttgaacccatcaatctca 639
Query: 742 tctggatccgcaccataagaaaccaaaagttttatcaattctgatccaccgcccattttt 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tctggatccgcaccataagaaaccaaaagttttatcaattctgatccaccgcccattttt 579
Query: 802 gccacaatatgcaaaggacataaaccttgngaatctctt-atctaaataaa-ttatggca 859
||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||| ||
Sbjct: 578 gccacaatatgcaaaggacataaaccttgggaatctcttaatctagataaatttatgtca 519
Query: 860 cccttttctagaaaaac-ttagctgcttcataatttttgtttga 902
||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 518 cccttttctagaataactttagctgcttcataatttttgtttga 475
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6899
Number of Sequences: 1807
Number of extensions: 6899
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)