BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA04RM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig441 1465 0.0
>3x_Contig441
Length = 2196
Score = 1465 bits (739), Expect = 0.0
Identities = 743/745 (99%)
Strand = Plus / Plus
Query: 46 ttcaagaatttggcagttctggccttctttggagctatgatggtattagtgaaagattca 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1452 ttcaagaatttggcagttctggccttctttggagctatgatggtattagtgaaagattca 1511
Query: 106 atctctggagttattatcactccaattttgctcaaaattaaaatgtctaaattagataaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1512 atctctggagttattatcactccaattttgctcaaaattaaaatgtctaaattagataaa 1571
Query: 166 ttctcatggcagttggttaacactgcctttatcttgtatggtttatgcgatatattcaag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1572 ttctcatggcagttggttaacactgcctttatcttgtatggtttatgcgatatattcaag 1631
Query: 226 taagaaaccatttcgtctgcctttgaatctagagctttctgcttctttatctcctgaatc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1632 taagaaaccatttcgtctgcctttgaatctagagctttctgcttctttatctcctgaatc 1691
Query: 286 gcctccgggagtaattctggggatcttttacgtttattgatcttctggaactcgtttaat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1692 gcctccgggagtaattctggggatcttttacgtttattgatcttctggaactcgtttaat 1751
Query: 346 gactctatatcctcgtgtaatttttctgccgcttttgccttcgctcttctcctggtgtca 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1752 gactctatatcctcgtgtaatttttctgccgcttttgccttcgctcttctcctggtgtca 1811
Query: 406 ctcattggggttaatggctgagatgggttttcgaggctctcagcagcagataaagatgat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1812 ctcattggggttaatggctgagatgggttttcgaggctctcagcagcagataaagatgat 1871
Query: 466 aactcccttgatgttattggtgtagcaatactgcctttatcattttttgattctatagtt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1872 aactcccttgatgttattggtgtagcaatactgcctttatcattttttgattctatagtt 1931
Query: 526 ccattctcttgatgtacagacatttccggtgattccacaggtgtactttcttttgcctct 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1932 ccattctcttgatgtacagacatttccggtgattccacaggtgtactttcttttgcctct 1991
Query: 586 tcttgtaactctttaggaaatttagttaatgatgtatcattattagaagatttgggaacc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1992 tcttgtaactctttaggaaatttagttaatgatgtatcattattagaagatttgggaacc 2051
Query: 646 tgcgtcacatctccttgctcatcttctggagcattggttaatgacacgtcgtggttagat 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2052 tgcgtcacatctccttgctcatcttctggagcattggttaatgacacgtcgtggttagat 2111
Query: 706 gatttagaggtttgagtcaaatgttcttccgctgctggtgtggtangcattgaaatggga 765
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2112 gatttagaggtttgagtcanatgttcttccgctgctggtgtggtaggcattgaaatggga 2171
Query: 766 tgttctttgttcagctgttgagaat 790
|||||||||||||||||||||||||
Sbjct: 2172 tgttctttgttcagctgttgagaat 2196
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6904
Number of Sequences: 1807
Number of extensions: 6904
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)