BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA05RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig287 799 0.0
3x_Contig1491 365 e-100
>3x_Contig287
Length = 1432
Score = 799 bits (403), Expect = 0.0
Identities = 433/443 (97%)
Strand = Plus / Plus
Query: 47 caatagattcaccgtatcaacggctgttacaattgaataaacgaatgaaaaacaacccgc 106
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 988 caatagattcaccgtatcaacggctgttacaattgaataaacgaatgacaaacaacccgc 1047
Query: 107 acttagttcaacctgcaaacaattaaaggcgagtaccttatatcgaccttaaataacaat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 acttagttcaacctgcaaacaattaaaggcgagtaccttatatcgaccttaaataacaat 1107
Query: 167 ccaaggatcctaaaaaccgattgtgctaaaagcagtcttgcttcatttgcaaatattgaa 226
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 ccaaggctcctaaaaaccgattgtgctaaaagcagtcttgcttcatttgcaaatattgac 1167
Query: 227 gttgttcattttgcaattggatgtttctttcaatatttttcatttcgtcaaacatcgccc 286
|||||||||||||||||||||||| ||| ||||||||| | ||||||||||||||||||
Sbjct: 1168 gttgttcattttgcaattggatgtctctctcaatatttcccctttcgtcaaacatcgccc 1227
Query: 287 aaaaacattcaaaaactatccgggtaatagtatagcctctgatgagatcgctattaccat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1228 aaaaacattcaaaaactatccgggtaatagtatagcctctgatgagatcgctattaccat 1287
Query: 347 ttaaacagttttaggcaaaaagctagagatgaatacagctgtgaagtatgtttttggatg 406
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 1288 ttaaacagttttaggcaaaaacctagagatgaatacagctgtgaagtatgtttttcgatg 1347
Query: 407 aggacgtctcatcagagtaatacttgggagtttgtcagctgttgtcaagagaactataga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1348 aggacgtctcatcagagtaatacttgggagtttgtcagctgttgtcaagagaactataga 1407
Query: 467 gcaacatgatcacgaaatatttt 489
|||||||||||||||||||||||
Sbjct: 1408 gcaacatgatcacgaaatatttt 1430
>3x_Contig1491
Length = 9571
Score = 365 bits (184), Expect = e-100
Identities = 231/239 (96%), Gaps = 6/239 (2%)
Strand = Plus / Plus
Query: 670 gctaggttgttcttaagtgctattcctccttcacaaagaacaagt-ggattacaattgca 728
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gctaggttgttcttaagtgctattcctccttcacaaagaacaagtaggattacaattgca 60
Query: 729 aaacgaagttntgg-tttctggctctaataagaaacctacagtgaaagttactttcaaag 787
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaacgaagttttgggtttctggctctaataagaaacctacagtgaaagttactttcaaag 120
Query: 788 ataaaactgaattgaaagctgatccaagcagtatgaacttcatggnaacta-ggaactac 846
|||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 121 ataaaactgaattggaagctgatccaagcagtatgaacttcatgg-aactagggaactac 179
Query: 847 tttgatcgtcattcaagaaaattggccct-aaggaaagtattg-atctcaatgatttct 903
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 180 tttgatcgtcattcaagaaaattggccctaaaggaaagtattgaatctcaatgatttct 238
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7503
Number of Sequences: 1807
Number of extensions: 7503
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)