BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA06FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1532 0.0
>3x_Contig1486
Length = 12131
Score = 1532 bits (773), Expect = 0.0
Identities = 820/829 (98%), Gaps = 5/829 (0%)
Strand = Plus / Minus
Query: 89 tatcttcttctcctgttcagaaacactttgagtacaaatcaatgcactcttgatatctgg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2959 tatcttcttctcctgttcagaaacactttgagtacaaatcaatgcactcttgatatctgg 2900
Query: 149 gatttgatacaacatcaatattgatcaatcacgtcgttcttgctcaacggtatctgctgt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2899 gatttgatacaacatcaatattgatcaatcacgtcgttcttgctcaacggtatctgctgt 2840
Query: 209 ggcagtttttattatttccttttatagtgcataagtaagatcaaatgttttggttgattc 268
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2839 ggcagtttttatgagttccttttatagtgcataagtaagatcaaatgttttggttgattc 2780
Query: 269 aatatataaaatttttttaatatgttaacaataatcctattaaactaatatcaaacgaat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2779 aatatataaaatttttttaatatgttaacaataatcctattaaactaatatcaaacgaat 2720
Query: 329 tcaacatggcactagtgactgacattaataaaggataactgcgatctgattatagttaca 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2719 tcaacatggcactagtgactgacattaataaaggataactgcgatctgattatagttaca 2660
Query: 389 ctaacatcgaccttcaatacaccgaaagattctagaaaaagtctaaaatgtccggctcta 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2659 ctaacatcgaccttcaatacaccgaaagattctagaaaaagtctaaaatgtccggctcta 2600
Query: 449 aagtaggagctcctatggtacctccaatcaattgcatatacaactaccttcatcatcaga 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2599 aagtaggagctcctatggtacctccaatcaattgcatatacaactaccttcatcatcaga 2540
Query: 509 caacagtaacgttttggttatacgaacaagtacagacacgtataagaggcaagatcagag 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2539 caacagtaacgttttggttatacgaacaagtacagacacgtataagaggcaagatcagag 2480
Query: 569 gctttgatgagttcatgaatgtggtaatagatgacgctttcgaaatagctgtagatccga 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2479 gctttgatgagttcatgaatgtggtaatagatgacgctttcgaaatagctgtagatccga 2420
Query: 629 aaagtggtaaagagagcgatgataaagcagtgtttcttgggagaattatgttgaaaggtg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 aaagtggtaaagagagcgatgataaagcagtgtttcttgggagaattatgttgaaaggtg 2360
Query: 689 ataatataacacttgctgtggcagattgataatgcctactcagaaaatgataataggatg 748
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2359 ataatataacacttgttgtggcaaattgataatgcctactcagaaaatgataataggatg 2300
Query: 749 aaagaaagatgcttagagtgtagaagcattgatcggactctgtcgtgtaattatataagc 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2299 aaagaaagatgcttagagtgtagaagcattgatcggactctgtcgtgtaattatataagc 2240
Query: 809 ctgtatattataacggaaaaatgaaaggcactgaaatttcgataacggcgacaagcactt 868
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2239 ctgtatattataacggaaaaatgaaaggcactgaaatttcgataacggcgacaagcac-t 2181
Query: 869 atc-aggctaataaaga-atatttgttcgtaatctta-ggatctattta 914
||| ||||||||||||| ||| ||||||||||||||| |||||||||||
Sbjct: 2180 atcaaggctaataaagatata-ttgttcgtaatcttatggatctattta 2133
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7099
Number of Sequences: 1807
Number of extensions: 7099
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)