BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA06RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig642 1628 0.0
>3x_Contig642
Length = 2568
Score = 1628 bits (821), Expect = 0.0
Identities = 861/871 (98%), Gaps = 3/871 (0%)
Strand = Plus / Minus
Query: 48 tactagcttatgaactttgggggcgaattagaaggcttatcattatcataatatgttgac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2212 tactagcttatgaactttgggggcgaattagaaggcttatcattatcataatatgttgac 2153
Query: 108 gcaggacgatttgaaggccaagctagagaaagaaatacctaacttctaccatgcacttat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2152 gcaggacgatttgaaggccaagctagagaaagaaatacctaacttctaccatgcacttat 2093
Query: 168 aacagatacatcaaatgggtgtgggcagtcattcgatgtagtcgtcgttagcgacgtatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2092 aacagatacatcaaatgggtgtgggcagtcattcgatgtagtcgtcgttagcgacgtatt 2033
Query: 228 tgttggaaagaataagctatcgcgttgtaggatagtgaataaggcgttagctgaa-gaag 286
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 2032 tgttggaaagaataagctatcgcgttgtaggatagtgaataaggcgtta-ctgaaagaag 1974
Query: 287 tagcccaaattcatgcgtttggctgtaagtgctatacaaccaatgaatggaatgaaattc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1973 tagcccaaattcatgcgtttggctgtaagtgctatacaaccaatgaatggaatgaaattc 1914
Query: 347 tagggaactagatatggggtctacctctttgaaatgattcaagttcgttgaaaaaacgga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1913 tagggaactagatatggggtctacctctttgaaatgattcaagttcgttgaaaaaacgga 1854
Query: 407 ctacttttcagttaggtgcgacctggtgtctgccccactcaaatgacctttgccagcttc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1853 ctacttttcagttaggtgcgacctggtgtctgccccactcaaatgacctttgccagcttc 1794
Query: 467 tttcattacgctcttccttctgcatgtctgcattttaaatgtgcttgacccattcttata 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1793 tttcattacgctcttccttctgcatgtctgcattttaaatgtgcttgacccattcttata 1734
Query: 527 aaggaacgcatcgtttgagaaacaccaagggcatctaatattcatattggcgaaaagttt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1733 aaggaacgcatcgtttgagaaacaccaagggcatctaatattcatattggcgaaaagttt 1674
Query: 587 gtcaagattacattattgttataagtgtttaagtaatatgtatattagaatgcgttatga 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1673 gtcaagattacattattgttataagtgtttaagtaatatgtatattagaatgcgttatga 1614
Query: 647 catatatcacttcgaaaagatatgaagagccgctaccactaattagccttatatggtggg 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1613 catatatcacttcgaaaagatatgaagagccgctaccactaattagccttatatggtggg 1554
Query: 707 ggaagatcgtcgttgccccatttcatttgatgatttgcaagtccaacgaaactgaaacgc 766
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1553 ggaagatcgtcgttgccccatttcatttgttgatttgcaagtccaacgaaactgaaacgc 1494
Query: 767 tntccatctagaagaagaagccttgctccatcttcagattgtacgtanaatctttgattg 826
| ||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1493 tttccatctagaagagaaggccttgctccatcttcagattgtacgtaaaatctttgattg 1434
Query: 827 cgcattggtgaatacagagaatttctcatatccttcaggtcagatttgaaatatgactcc 886
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1433 cgcattggtgaatacagagaatttctcagatccttcaggtcagatttgaaatatgactcc 1374
Query: 887 tccaagaga-tcaatctcattggtactttat 916
||||||||| |||||||||||||||||||||
Sbjct: 1373 tccaagagattcaatctcattggtactttat 1343
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6787
Number of Sequences: 1807
Number of extensions: 6787
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)