BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA07RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1168 1594 0.0
>3x_Contig1168
Length = 4574
Score = 1594 bits (804), Expect = 0.0
Identities = 853/864 (98%), Gaps = 5/864 (0%)
Strand = Plus / Minus
Query: 40 agctttatagacc-cagtgtctggggtttttaaaacatttctcaaaacatcaagatgata 98
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4402 agctttatagaccacagtgtctggggtttttaaaacatttctcaaaacatcaagatgata 4343
Query: 99 agtaaatagcgccaaatcgtccatattgccaatcttttcgttatttataaactcaaattg 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4342 agtaaatagcgccaaatcgtccatattgccaatcttttcgttatttataaactcaaattg 4283
Query: 159 aagggggttttcaaccaaaagttcaaagaacttgtttccggattcaccagaaatgataga 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4282 aagggggttttcaaccaaaagttcaaagaacttgtttccggattcaccagaaatgataga 4223
Query: 219 taccacccattcatgcacataccagtagttagaattcttttcatcagaaagttcgtccaa 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4222 taccacccattcatgcacataccagtagttagaattcttttcatcagaaagttcgtccaa 4163
Query: 279 agctagggacaaaggtctttttataatatcaaagttacctgctagatgagtccagaggca 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4162 agctagggacaaaggtctttttataatatcaaagttacctgctagatgagtccagaggca 4103
Query: 339 gtctagaacaactagacgattgttaatgtcgcaatcccccaaataaacagaagctaagca 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4102 gtctagaacaactagacgattgttaatgtcgcaatcccccaaataaacagaagctaagca 4043
Query: 399 gctttcaattcttgacgatggaacatgtcttgttatgactttgagcatttcgactgcg-t 457
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4042 gctttcaattcttgacgatggaacatgtcttgttatgactttgagcatttcgactgcgct 3983
Query: 458 caatttgtttattatgatctaagagtaatgaccacagccctttcataattatctttaata 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3982 caatttgtttattatgatctaagagtaatgaccacagccctttcataattatctttaata 3923
Query: 518 gtcgcatcgaatccaatatcggtaaattacggaacaaatatttagtgtaaatctcaacaa 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3922 gtcgcatcgaatccaatatcggtaaattacggaacaaatatttagtgtaaatctcaacaa 3863
Query: 578 ttccttgtagtgactgttcaggagcactttcgattgcatcattttgttcaaagatacact 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3862 ttccttgtagtgactgttcaggagcactttcgattgcatcattttgttcaaagatacact 3803
Query: 638 ctatcaaatcagtatctgaccacttcaccacttcagcttcttctgatacatcatactgct 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3802 ctatcaaatcagtatctgaccacttcaccacttcagcttcttctgatacatcatactgct 3743
Query: 698 cggggattatttcaatgaataatacanacaatttcgaaatatcatttatgttttgatatc 757
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3742 cggggattatttcaatgaataatacaaacaatttcgaaatatcatttatgttttgatatc 3683
Query: 758 ttcgaatattttcgatcaacagtaaatgcactctattagtgattaaaaaa-ttagatctg 816
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 3682 ttcgaatattttcgatcaacagtaaatgcactctataagtgattaaaaaagttagatctg 3623
Query: 817 ccgtattgaaaggnagacttnaatcanatgacgaattttagatctttggaatttaagagg 876
||||||||||||| ||||| ||||| |||||||| ||||||||||||||| ||||||||
Sbjct: 3622 ccgtattgaaaggaggacttaaatcagatgacgaa-tttagatctttggaa-ttaagagg 3565
Query: 877 atctgacacctgttcatagtaaga 900
||||||||||||||||||||||||
Sbjct: 3564 atctgacacctgttcatagtaaga 3541
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7550
Number of Sequences: 1807
Number of extensions: 7550
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)