BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA08FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1147 1600 0.0
>3x_Contig1147
Length = 6505
Score = 1600 bits (807), Expect = 0.0
Identities = 816/818 (99%), Gaps = 1/818 (0%)
Strand = Plus / Minus
Query: 87 cctcattaacaattttgaaaatcttgaactatcgtggtgatgaagttgccaaaagggcta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2050 cctcattaacaattttgaaaatcttgaactatcgtggtgatgaagttgccaaaagggcta 1991
Query: 147 tattagatactat-cttcggccctatggataacgaaatatcttctaaaccacctcagctc 205
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1990 tattagatactatgcttcggccctatggataacgaaatatcttctaaaccacctcagctc 1931
Query: 206 ttatatcagttgttgagtgacacgaattatggaccatcttttgtttataaagttttgtct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1930 ttatatcagttgttgagtgacacgaattatggaccatcttttgtttataaagttttgtct 1871
Query: 266 attcctatgttggaaggagacgttagacaccatgttatcgaacaagttcgctacattttg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1870 attcctatgttggaaggagacgttagacaccatgttatcgaacaagttcgctacattttg 1811
Query: 326 accacagaatctaatatcacacagcatcgcagactcttggaagaagtgggcttgaatgca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1810 accacagaatctaatatcacacagcatcgcagactcttggaagaagtgggcttgaatgca 1751
Query: 386 ataaacaatcaaccatctaccgctcaaaccaagccaagaatgagtatttcccatgttttt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1750 ataaacaatcaaccatctaccgctcaaaccaagccaagaatgagtatttcccatgttttt 1691
Query: 446 ggtaatgaccatcctcaacatatgaggactgtttccgtcaacagtgtcaggtcggcatct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1690 ggtaatgaccatcctcaacatatgaggactgtttccgtcaacagtgtcaggtcggcatct 1631
Query: 506 tctagaccaagagcctcctcgaacgcacaatctcaacagcaacccatccaatcttctcag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1630 tctagaccaagagcctcctcgaacgcacaatctcaacagcaacccatccaatcttctcag 1571
Query: 566 gtccaagctcagttacctcaacaatcccaatctcaacctcagcatcaacctcagcaagcg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 gtccaagctcagttacctcaacaatcccaatctcaacctcagcatcaacctcagcaagcg 1511
Query: 626 tccatttctggcatctctgggcaagcaagctactacacctaccctggcatgtttcccgct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1510 tccatttctggcatctctgggcaagcaagctactacacctaccctggcatgtttcccgct 1451
Query: 686 tcacaaccgtatcagtattccacgtcaaccagtggtctgaatgatgatttagtgtcaaat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 tcacaaccgtatcagtattccacgtcaaccagtggtctgaatgatgatttagtgtcaaat 1391
Query: 746 tttgatatgctgacattcaataatggcacgcaaatatccttgccgcaactaacaatgaat 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1390 tttgatatgctgacattcaataatggcacgcaaatatccttgccgcaactaacaatgaat 1331
Query: 806 ggtcaaccactcccccattctcagaatagacatcataatggacagtttggtgatggaatg 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1330 ggtcaaccactcccccattctcagaatagacatcataatggacagtttggtgatggaatg 1271
Query: 866 ttcaaccactgatttgttcacgagctatngttacatac 903
|||||||||||||||||||||||||||| |||||||||
Sbjct: 1270 ttcaaccactgatttgttcacgagctattgttacatac 1233
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5272
Number of Sequences: 1807
Number of extensions: 5272
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)