BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA08RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1613 1667 0.0
>3x_Contig1613
Length = 13977
Score = 1667 bits (841), Expect = 0.0
Identities = 857/861 (99%), Gaps = 1/861 (0%)
Strand = Plus / Minus
Query: 50 acgcaaaacaaactttgaat-aattgttggttgaattggatgggttttcccaaacaagcg 108
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2292 acgcaaaacaaactttgaatcaattgttggttgaattggatgggttttcccaaacaagcg 2233
Query: 109 gtataattatcatcggtgccactaacttcccagaatcattggataaggctttgacaagac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2232 gtataattatcatcggtgccactaacttcccagaatcattggataaggctttgacaagac 2173
Query: 169 caggtagattcgataaggtcgtcaatgttgacttacctgatgttcgcgggcgtgctgaca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2172 caggtagattcgataaggtcgtcaatgttgacttacctgatgttcgcgggcgtgctgaca 2113
Query: 229 ttttgagacatcatatgaagaaggttactgttgctcctgatgtggacccaactatcattg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2112 ttttgagacatcatatgaagaaggttactgttgctcctgatgtggacccaactatcattg 2053
Query: 289 caagaggaaccccaggtctttctggtgctgagttgatgaatttagttaaccaagccgccg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2052 caagaggaaccccaggtctttctggtgctgagttgatgaatttagttaaccaagccgccg 1993
Query: 349 tatacgcttgtcagaaaaatgctattgctgtcgatatgcagcactttgaatgggcaaagg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1992 tatacgcttgtcagaaaaatgctattgctgtcgatatgcagcactttgaatgggcaaagg 1933
Query: 409 ataaaatcttgatgggtgctgaaaggaaaactatggttctcactgaagctactaaaagag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1932 ataaaatcttgatgggtgctgaaaggaaaactatggttctcactgaagctactaaaagag 1873
Query: 469 ccaccgcttatcatgaagccgggcatgcattgatggcactgtacactgccggggcaacgc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1872 ccaccgcttatcatgaagccgggcatgcattgatggcactgtacactgccggggcaacgc 1813
Query: 529 cattatacaaagcaactatcttgccaagaggcagggcattaggtatcactttccaacttc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1812 cattatacaaagcaactatcttgccaagaggcagggcattaggtatcactttccaacttc 1753
Query: 589 ctgaaatggataaggtggacatcactaagaaagaatgtctagctaggttagatgtgtgca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1752 ctgaaatggataaggtggacatcactaagaaagaatgtctagctaggttagatgtgtgca 1693
Query: 649 tgggtggtaagattgcagaagaactgatttatggtaaggaaaatactaccagtggttgtg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1692 tgggtggtaagattgcagaagaactgatttatggtaaggaaaatactaccagtggttgtg 1633
Query: 709 gttcggatttacaaaatgctaccaacactgctagagcaatggttactcagtacggtatga 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1632 gttcggatttacaaaatgctaccaacactgctagagcaatggttactcagtacggtatga 1573
Query: 769 gtgaacaagtcggaccagtaaatttggctgataagtgggactcatggtctggaaaaattc 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1572 gtgaacaagtcggaccagtaaatttggctgataagtgggactcatggtctggaaaaattc 1513
Query: 829 gtgacgttgctgataacgaagtactttgacttttgaaagcttcagaagataggacgagag 888
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1512 gtgacgttgctgataacgaagtacttgaacttttgaaagcttcagaagataggacgagag 1453
Query: 889 ccttattagcagaaaaggaaa 909
||||||||||||||| |||||
Sbjct: 1452 ccttattagcagaaagggaaa 1432
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5737
Number of Sequences: 1807
Number of extensions: 5737
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)