BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA09RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1631 1538 0.0
>3x_Contig1631
Length = 12284
Score = 1538 bits (776), Expect = 0.0
Identities = 813/820 (99%), Gaps = 4/820 (0%)
Strand = Plus / Plus
Query: 50 tatcagttttgctatactatgcaacccgcctggcaccaacaatttccattatcattattc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5293 tatcagttttgctatactatgcaacccgcctggcaccaacaatttccattatcattattc 5352
Query: 110 ttaatagagaactctttttttctttttcttgaaatcctgtgaagaaaaaaatactgaaaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5353 ttaatagagaactctttttttctttttcttgaaatcctgtgaagaaaaaaatactgaaaa 5412
Query: 170 gaattgttaaagcgatgagatgagatgagatgaaatgagactgaaagtatttgatagcaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5413 gaattgttaaagcgatgagatgagatgagatgaaatgagactgaaagtatttgatagcaa 5472
Query: 230 aaagattcattgtgaactgtccccatttggcagagcacacttttcattatcataatataa 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5473 aaagattcattgtgaactgtccccatttggcagagcacacttttcattatcataatataa 5532
Query: 290 atacattattcagtaatttcaagatgggtttggcagcagcaaggaataaacaaaggtttg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5533 atacattattcagtaatttcaagatgggtttggcagcagcaaggaataaacaaaggtttg 5592
Query: 350 gattggatccaagaaacacaacttggagtaacaatacatcaagatttggacacaaacatc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5593 gattggatccaagaaacacaacttggagtaacaatacatcaagatttggacacaaacatc 5652
Query: 410 tagagaaactaggatggaaacctggttccggtttgggattagttccagattctacaacat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5653 tagagaaactaggatggaaacctggttccggtttgggattagttccagattctacaacat 5712
Query: 470 cacatatcaaggtttctatcaaagatgacaatcttgggttgggagcgaaactcaaaaaga 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5713 cacatatcaaggtttctatcaaagatgacaatcttgggttgggagcgaaactcaaaaaga 5772
Query: 530 aagagaagcaagatgaatttgatagtggtgaatgtacgggattggacgtcttccaaagat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5773 aagagaagcaagatgaatttgatagtggtgaatgtacgggattggacgtcttccaaagat 5832
Query: 590 tacttggaagattaaatggtaatgagcagacaatttcagatgaattggataagcaaagaa 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5833 tacttggaagattaaatggtaatgagcagacaatttcagatgaattggataagcaaagaa 5892
Query: 650 ccgacaatattataaacgggaaatgggggatacactttgtgaagggagaagtccttgcaa 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5893 ccgacaatattataaacgggaaatgggggatacactttgtgaagggagaagtccttgcaa 5952
Query: 710 gtacatgggatgctgaaaataagcaactcataagttatagtatgggtaagaagagaccgg 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5953 gtacatgggatgctgaaaataagcaactcataagttatagtatgggtaagaagagaccgg 6012
Query: 770 tagagggatcgtctgatagtgaggttagcgatcggaagaaggacaaag-aggttaaaaaa 828
|||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||
Sbjct: 6013 tagagggatcgtctgatagtgaggttagcgatcggaagaa-gacaaagaaggtaaaaaaa 6071
Query: 829 gagaag-atgttaagaaagtc-aaaaggagaagaaagaga 866
|||||| | |||||||| ||| ||||||||||||||||||
Sbjct: 6072 gagaagaaggttaagaaggtcaaaaaggagaagaaagaga 6111
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,430
Number of Sequences: 1807
Number of extensions: 10430
Number of successful extensions: 542
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)