BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZA10FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig879 670 0.0
3x_Contig782 591 e-168
>3x_Contig879
Length = 2855
Score = 670 bits (338), Expect = 0.0
Identities = 403/424 (95%), Gaps = 1/424 (0%)
Strand = Plus / Minus
Query: 483 tggatccactatagagcctaaagatttccatttagttaactgtagttgcgcgatttcacg 542
|||||| ||||| |||| |||||||||| |||||||||| |||||||| | ||||| |||
Sbjct: 2671 tggatcaactatggagcataaagatttcaatttagttaaatgtagttgagagatttaacg 2612
Query: 543 aacaattggatcattggaccccagtaacgttatcaaaacagataaatgtttgtttttgga 602
||||||||||| |||||| ||||| ||||| |||| |||||||||||||||||||||
Sbjct: 2611 aacaattggataattggaaaaaagtaaagttataaaaaaagataaatgtttgtttttgga 2552
Query: 603 aattatagccgtctttgaagcatttacaatgtcgttgacagagaggaaaagaagtatttt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2551 aattatagccgtctttgaagcatttacaatgtcgttgacagagaggaaaagaagtatttt 2492
Query: 663 ctgaatatcagaagcagtggatagcatagaatcaatctcagcccttgtttcatcgactat 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2491 ctgaatatcagaagcagtggatagcatagaatcaatctcagcccttgtttcatcgactat 2432
Query: 723 ccatccacagagctttgcatgccgttgtttttt-ataagaactttttcaacttctgggga 781
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2431 ccatccacagagctttgcatgccgttgttttttaataagaactttttcaacttctgggga 2372
Query: 782 attgacagcgtatggaagggaaagaggatcaaacaaaatggatgctaacttcaatattnt 841
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2371 attgacagcgtatggaagggaaagaggatcaaacaaaatggatgctaacttcaatatttt 2312
Query: 842 gtcttcatttgggacatcagaatatgcagaagcaagattatcgaactgntaagaacattt 901
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 2311 gtcttcatttgggacatcagaatatgcagaagcaagattatcgaactgtaaggaacattt 2252
Query: 902 ccca 905
||||
Sbjct: 2251 ccca 2248
>3x_Contig782
Length = 2529
Score = 591 bits (298), Expect = e-168
Identities = 313/317 (98%), Gaps = 1/317 (0%)
Strand = Plus / Plus
Query: 91 tgatcaatgaactctaacgtgattctgtcacgcaaatgttcagtaatatcttctctttgt 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2213 tgatcaatgaactctaacgtgattctgtcacgcaaatgttcagtaatatcttctctttgt 2272
Query: 151 aacatatgcgtaaagaaccaacagagccgaacatcgaatatctccgaatgcgatctcaat 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2273 aacatatgcgtaaagaaccaacagagccgaacatcgaatatctccgaatgcgatctcaat 2332
Query: 211 tcatctaaaagttgctcaactgggatagttgggcaagcaaataacttcataatattcatt 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2333 tcatctaaaagttgctcaactgggatagttgggcaagcaaataacttcataatattcatt 2392
Query: 271 gacaagttttcaaaagttgaaacagacgatgtatcaacaaatggatttgatatagcattc 330
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 2393 gacaagttttcaaaagttgaaacagacgatgtttcaacaaatgggtttgatatagcattc 2452
Query: 331 ataatcaaatcttctagagtcaatgaatcgatatctccataatatacttgtaaacctaa- 389
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2453 ataatcaaatcttctagagtcaatgaatcgatatctncataatatacttgtaaacctaan 2512
Query: 390 attcactaaccgcgaaa 406
|||||||||||||||||
Sbjct: 2513 attcactaaccgcgaaa 2529
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6946
Number of Sequences: 1807
Number of extensions: 6946
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)